========================================================== Starting on : Thu Sep 19 12:48:45 EDT 2019 Running on node : scc-wk3 Current job ID : 9439443 Current job name : dropseq_10X_G171C_lnconly_UseThis Task index number : ========================================================== /share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/bin cellranger count (3.1.0) Copyright (c) 2019 10x Genomics, Inc. All rights reserved. ------------------------------------------------------------------------------- Martian Runtime - '3.1.0-v3.2.3' Serving UI at http://scc-wk3:36207?auth=5MDmZTJ2xpKM44N5EonJhVMHLrJhZ5OuVgiUxhDN0Yw Running preflight checks (please wait)... 2019-09-19 12:48:51 [runtime] (ready) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF 2019-09-19 12:48:51 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF.fork0.chnk0.main 2019-09-19 12:49:06 [runtime] (chunks_complete) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF Checking sample info... Checking FASTQ folder... Checking libraries... Checking reference... Checking reference_path (/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/ref/mm10_ensmbl/mm10_premrna_v1.0_lnc-only) on scc-wk3... Checking chemistry... Checking optional arguments... mrc: '3.1.0-v3.2.3' mrp: '3.1.0-v3.2.3' Anaconda: Python 2.7.14 :: Anaconda, Inc. numpy: 1.14.2 scipy: 1.0.1 pysam: 0.14.1 h5py: 2.8.0 pandas: 0.22.0 STAR: STAR_2.5.1b samtools: samtools 1.7 Using htslib 1.7 Copyright (C) 2018 Genome Research Ltd. 2019-09-19 12:49:15 [runtime] (ready) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION 2019-09-19 12:49:15 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION.fork0.chnk0.main 2019-09-19 12:49:16 [runtime] (ready) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES 2019-09-19 12:49:17 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES.fork0.chnk0.main 2019-09-19 12:49:17 [runtime] (ready) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY 2019-09-19 12:49:18 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0.main 2019-09-19 12:49:18 [runtime] (chunks_complete) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION 2019-09-19 12:49:20 [runtime] (chunks_complete) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES 2019-09-19 12:49:26 [runtime] (progress) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0: Building transcriptome... 2019-09-19 12:51:12 [runtime] (progress) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0: Building kmer index... 2019-09-19 12:52:03 [runtime] (progress) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0: Mapping reads... 2019-09-19 12:52:15 [runtime] (chunks_complete) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY 2019-09-19 12:52:18 [runtime] (ready) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS 2019-09-19 12:52:18 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS.fork0.chnk0.main 2019-09-19 12:52:21 [runtime] (chunks_complete) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS 2019-09-19 12:52:24 [runtime] (ready) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS 2019-09-19 12:52:24 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.split 2019-09-19 12:52:24 [runtime] (ready) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY 2019-09-19 12:52:24 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY.fork0.split 2019-09-19 12:52:26 [runtime] (split_complete) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS 2019-09-19 12:52:27 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.chnk0.main 2019-09-19 12:52:28 [runtime] (split_complete) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY 2019-09-19 12:52:29 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY.fork0.join 2019-09-19 12:52:47 [runtime] (join_complete) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY 2019-09-19 12:58:32 [runtime] (update) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0 chunks_running 2019-09-19 13:04:39 [runtime] (update) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0 chunks_running 2019-09-19 13:10:43 [runtime] (update) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0 chunks_running 2019-09-19 13:16:44 [runtime] (update) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0 chunks_running 2019-09-19 13:16:59 [runtime] (chunks_complete) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS 2019-09-19 13:17:00 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.join 2019-09-19 13:17:04 [runtime] (join_complete) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS 2019-09-19 13:17:05 [runtime] (ready) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS 2019-09-19 13:17:05 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.split 2019-09-19 13:17:11 [runtime] (split_complete) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS 2019-09-19 13:17:18 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk00.main 2019-09-19 13:17:19 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk01.main 2019-09-19 13:17:19 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk02.main 2019-09-19 13:17:20 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk03.main 2019-09-19 13:17:20 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk04.main 2019-09-19 13:17:21 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk05.main 2019-09-19 13:17:21 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk06.main 2019-09-19 13:17:21 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk07.main 2019-09-19 13:17:22 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk08.main 2019-09-19 13:17:23 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk09.main 2019-09-19 13:17:24 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk10.main 2019-09-19 13:17:24 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk11.main 2019-09-19 13:17:25 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk12.main 2019-09-19 13:17:25 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk13.main 2019-09-19 13:17:26 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk14.main 2019-09-19 13:17:26 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk15.main 2019-09-19 13:17:27 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk16.main 2019-09-19 13:17:28 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk17.main 2019-09-19 13:17:29 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk18.main 2019-09-19 13:17:30 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk19.main 2019-09-19 13:17:30 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk20.main 2019-09-19 13:17:30 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk21.main 2019-09-19 13:17:33 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk22.main 2019-09-19 13:17:34 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk23.main 2019-09-19 13:17:35 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk24.main 2019-09-19 13:17:35 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk25.main 2019-09-19 13:17:36 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk26.main 2019-09-19 13:17:37 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk27.main 2019-09-19 13:17:37 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk28.main 2019-09-19 13:17:37 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk29.main 2019-09-19 13:17:38 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk30.main 2019-09-19 13:17:39 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk31.main 2019-09-19 13:17:39 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk32.main 2019-09-19 13:17:40 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk33.main 2019-09-19 13:17:40 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk34.main 2019-09-19 13:17:41 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk35.main 2019-09-19 13:17:42 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk36.main 2019-09-19 13:17:42 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk37.main 2019-09-19 13:17:42 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk38.main 2019-09-19 13:17:42 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk39.main 2019-09-19 13:17:43 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk40.main 2019-09-19 13:17:43 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk41.main 2019-09-19 13:17:43 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk42.main 2019-09-19 13:17:44 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk43.main 2019-09-19 13:17:44 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk44.main 2019-09-19 13:23:27 [runtime] (update) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0 chunks running (0/45 completed) 2019-09-19 13:28:32 [runtime] (update) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0 chunks running (11/45 completed) 2019-09-19 13:33:46 [runtime] (update) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0 chunks running (28/45 completed) 2019-09-19 13:37:44 [runtime] (chunks_complete) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS 2019-09-19 13:37:45 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.join 2019-09-19 13:39:07 [runtime] (join_complete) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS 2019-09-19 13:39:16 [runtime] (ready) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS 2019-09-19 13:39:16 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.split 2019-09-19 13:39:19 [runtime] (split_complete) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS 2019-09-19 13:39:23 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk00.main 2019-09-19 13:39:24 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk01.main 2019-09-19 13:39:24 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk02.main 2019-09-19 13:39:25 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk03.main 2019-09-19 13:39:25 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk04.main 2019-09-19 13:39:25 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk05.main 2019-09-19 13:39:26 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk06.main 2019-09-19 13:39:29 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk07.main 2019-09-19 13:39:32 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk08.main 2019-09-19 13:39:37 [runtime] 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ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk34.main 2019-09-19 16:35:24 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk35.main 2019-09-19 16:35:24 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk36.main 2019-09-19 16:35:25 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk37.main 2019-09-19 16:35:26 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk38.main 2019-09-19 16:35:26 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk39.main 2019-09-19 16:35:27 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk40.main 2019-09-19 16:35:27 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk41.main 2019-09-19 16:35:28 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk42.main 2019-09-19 16:35:28 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk43.main 2019-09-19 16:35:29 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk44.main 2019-09-19 16:35:29 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk45.main 2019-09-19 16:35:35 [runtime] (chunks_complete) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT 2019-09-19 16:35:37 [runtime] (ready) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX 2019-09-19 16:35:37 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX.fork0.split 2019-09-19 16:37:00 [runtime] (update) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running 2019-09-19 16:38:04 [runtime] (split_complete) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX 2019-09-19 16:38:05 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX.fork0.join 2019-09-19 16:38:11 [runtime] (join_complete) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX 2019-09-19 16:38:14 [runtime] (ready) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_FBPCA 2019-09-19 16:38:15 [runtime] (disabled) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_FBPCA 2019-09-19 16:38:15 [runtime] (ready) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS 2019-09-19 16:38:15 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS.fork0.split 2019-09-19 16:38:15 [runtime] (ready) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA 2019-09-19 16:38:16 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA.fork0.split 2019-09-19 16:38:18 [runtime] (ready) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH 2019-09-19 16:38:19 [runtime] (disabled) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH 2019-09-19 16:38:22 [runtime] (split_complete) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS 2019-09-19 16:38:23 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS.fork0.join 2019-09-19 16:38:29 [runtime] (split_complete) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA 2019-09-19 16:38:30 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA.fork0.chnk0.main 2019-09-19 16:38:39 [runtime] (join_complete) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS 2019-09-19 16:38:41 [runtime] (chunks_complete) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA 2019-09-19 16:38:42 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA.fork0.join 2019-09-19 16:38:47 [runtime] (join_complete) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA 2019-09-19 16:38:48 [runtime] (ready) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT 2019-09-19 16:38:49 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT.fork0.chnk0.main 2019-09-19 16:38:54 [runtime] (chunks_complete) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT 2019-09-19 16:38:58 [runtime] (ready) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS 2019-09-19 16:38:58 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.split 2019-09-19 16:38:59 [runtime] (ready) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING 2019-09-19 16:38:59 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.split 2019-09-19 16:38:59 [runtime] (ready) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE 2019-09-19 16:39:00 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE.fork0.split 2019-09-19 16:39:02 [runtime] (ready) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP 2019-09-19 16:39:02 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP.fork0.split 2019-09-19 16:39:03 [runtime] (chunks_complete) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES 2019-09-19 16:39:06 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.join 2019-09-19 16:39:08 [runtime] (split_complete) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS 2019-09-19 16:39:10 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk0.main 2019-09-19 16:39:11 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk1.main 2019-09-19 16:39:11 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk2.main 2019-09-19 16:39:12 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk3.main 2019-09-19 16:39:13 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk4.main 2019-09-19 16:39:13 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk5.main 2019-09-19 16:39:14 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk6.main 2019-09-19 16:39:15 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk7.main 2019-09-19 16:39:15 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk8.main 2019-09-19 16:39:23 [runtime] (split_complete) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE 2019-09-19 16:39:24 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE.fork0.chnk0.main 2019-09-19 16:39:24 [runtime] (split_complete) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING 2019-09-19 16:39:25 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.chnk0.main 2019-09-19 16:39:27 [runtime] (chunks_complete) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS 2019-09-19 16:39:28 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.join 2019-09-19 16:39:28 [runtime] (split_complete) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP 2019-09-19 16:39:29 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP.fork0.chnk0.main 2019-09-19 16:39:31 [runtime] (chunks_complete) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING 2019-09-19 16:39:32 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.join 2019-09-19 16:39:34 [runtime] (chunks_complete) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE 2019-09-19 16:39:37 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE.fork0.join 2019-09-19 16:39:40 [runtime] (join_complete) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS 2019-09-19 16:39:45 [runtime] (join_complete) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE 2019-09-19 16:39:46 [runtime] (join_complete) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING 2019-09-19 16:39:48 [runtime] (chunks_complete) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP 2019-09-19 16:39:48 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP.fork0.join 2019-09-19 16:39:50 [runtime] (ready) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS 2019-09-19 16:39:50 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS.fork0.split 2019-09-19 16:39:56 [runtime] (split_complete) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS 2019-09-19 16:39:56 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS.fork0.chnk0.main 2019-09-19 16:39:56 [runtime] (join_complete) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP 2019-09-19 16:40:00 [runtime] (chunks_complete) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS 2019-09-19 16:40:01 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS.fork0.join 2019-09-19 16:40:07 [runtime] (join_complete) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES 2019-09-19 16:40:12 [runtime] (join_complete) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS 2019-09-19 16:40:13 [runtime] (ready) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING 2019-09-19 16:40:14 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING.fork0.chnk0.main 2019-09-19 16:40:15 [runtime] (ready) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS 2019-09-19 16:40:15 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS.fork0.split 2019-09-19 16:40:20 [runtime] (split_complete) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS 2019-09-19 16:40:21 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS.fork0.chnk0.main 2019-09-19 16:40:23 [runtime] (chunks_complete) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING 2019-09-19 16:40:27 [runtime] (ready) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION 2019-09-19 16:40:27 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.split 2019-09-19 16:40:31 [runtime] (split_complete) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION 2019-09-19 16:40:32 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk00.main 2019-09-19 16:40:33 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk01.main 2019-09-19 16:40:34 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk02.main 2019-09-19 16:40:34 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk03.main 2019-09-19 16:40:36 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk04.main 2019-09-19 16:40:37 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk05.main 2019-09-19 16:40:37 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk06.main 2019-09-19 16:40:38 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk07.main 2019-09-19 16:40:39 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk08.main 2019-09-19 16:40:39 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk09.main 2019-09-19 16:41:09 [runtime] (chunks_complete) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION 2019-09-19 16:41:10 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.join 2019-09-19 16:41:12 [runtime] (chunks_complete) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS 2019-09-19 16:41:13 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS.fork0.join 2019-09-19 16:41:19 [runtime] (join_complete) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS 2019-09-19 16:41:21 [runtime] (join_complete) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION 2019-09-19 16:41:24 [runtime] (ready) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS 2019-09-19 16:41:24 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS.fork0.split 2019-09-19 16:41:26 [runtime] (ready) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS 2019-09-19 16:41:26 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS.fork0.split 2019-09-19 16:41:29 [runtime] (split_complete) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS 2019-09-19 16:41:30 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS.fork0.chnk0.main 2019-09-19 16:41:30 [runtime] (split_complete) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS 2019-09-19 16:41:31 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS.fork0.chnk0.main 2019-09-19 16:41:37 [runtime] (chunks_complete) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS 2019-09-19 16:41:37 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS.fork0.join 2019-09-19 16:41:42 [runtime] (join_complete) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS 2019-09-19 16:41:48 [runtime] (chunks_complete) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS 2019-09-19 16:41:49 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS.fork0.join 2019-09-19 16:41:49 [runtime] (ready) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.CALL_PROTOSPACERS 2019-09-19 16:41:50 [runtime] (disabled) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.CALL_PROTOSPACERS 2019-09-19 16:41:50 [runtime] (ready) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET 2019-09-19 16:41:51 [runtime] (disabled) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET 2019-09-19 16:41:51 [runtime] (ready) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE 2019-09-19 16:41:51 [runtime] (disabled) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE 2019-09-19 16:41:51 [runtime] (ready) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS 2019-09-19 16:41:52 [runtime] (disabled) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS 2019-09-19 16:41:52 [runtime] (disabled) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER 2019-09-19 16:42:02 [runtime] (join_complete) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS 2019-09-19 16:42:11 [runtime] (ready) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS 2019-09-19 16:42:12 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS.fork0.chnk0.main 2019-09-19 16:42:29 [runtime] (chunks_complete) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS 2019-09-19 16:42:32 [runtime] (ready) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS 2019-09-19 16:42:32 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS.fork0.split 2019-09-19 16:42:38 [runtime] (split_complete) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS 2019-09-19 16:42:39 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS.fork0.chnk0.main 2019-09-19 16:42:46 [runtime] (chunks_complete) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS 2019-09-19 16:42:47 [runtime] (run:local) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS.fork0.join 2019-09-19 16:42:51 [runtime] (update) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running 2019-09-19 16:42:51 [runtime] (join_complete) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS 2019-09-19 16:48:49 [runtime] (update) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running 2019-09-19 16:54:45 [runtime] (join_complete) ID.10X_G171C_lnconly_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS Outputs: - Run summary HTML: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_lnconly_UseThis/outs/web_summary.html - Run summary CSV: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_lnconly_UseThis/outs/metrics_summary.csv - BAM: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_lnconly_UseThis/outs/possorted_genome_bam.bam - BAM index: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_lnconly_UseThis/outs/possorted_genome_bam.bam.bai - Filtered feature-barcode matrices MEX: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_lnconly_UseThis/outs/filtered_feature_bc_matrix - Filtered feature-barcode matrices HDF5: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_lnconly_UseThis/outs/filtered_feature_bc_matrix.h5 - Unfiltered feature-barcode matrices MEX: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_lnconly_UseThis/outs/raw_feature_bc_matrix - Unfiltered feature-barcode matrices HDF5: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_lnconly_UseThis/outs/raw_feature_bc_matrix.h5 - Secondary analysis output CSV: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_lnconly_UseThis/outs/analysis - Per-molecule read information: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_lnconly_UseThis/outs/molecule_info.h5 - CRISPR-specific analysis: null - Loupe Cell Browser file: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_lnconly_UseThis/outs/cloupe.cloupe - Feature Reference: null Waiting 6 seconds for UI to do final refresh. Pipestance completed successfully! 2019-09-19 16:55:06 Shutting down. Saving pipestance info to "10X_G171C_lnconly_UseThis/10X_G171C_lnconly_UseThis.mri.tgz" Finished .............. Thu Sep 19 16:56:05 EDT 2019