========================================================== Starting on : Thu Sep 19 16:59:50 EDT 2019 Running on node : scc-wk2 Current job ID : 9439503 Current job name : dropseq_10X_G171B_pcgonly_UseThis_omp28 Task index number : ========================================================== /share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/bin cellranger count (3.1.0) Copyright (c) 2019 10x Genomics, Inc. All rights reserved. ------------------------------------------------------------------------------- Martian Runtime - '3.1.0-v3.2.3' Serving UI at http://scc-wk2:42270?auth=ysmvzN5-sOKDR8_U3_zsS_7zFS2rrcsSHlSBinOCY2g Running preflight checks (please wait)... 2019-09-19 16:59:52 [runtime] (ready) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF 2019-09-19 16:59:52 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF.fork0.chnk0.main 2019-09-19 16:59:56 [runtime] (chunks_complete) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF Checking sample info... Checking FASTQ folder... Checking libraries... Checking reference... Checking reference_path (/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/ref/mm10_ensmbl/mm10_premrna_v1.0_pcg-only) on scc-wk2... Checking chemistry... Checking optional arguments... mrc: '3.1.0-v3.2.3' mrp: '3.1.0-v3.2.3' Anaconda: Python 2.7.14 :: Anaconda, Inc. numpy: 1.14.2 scipy: 1.0.1 pysam: 0.14.1 h5py: 2.8.0 pandas: 0.22.0 STAR: STAR_2.5.1b samtools: samtools 1.7 Using htslib 1.7 Copyright (C) 2018 Genome Research Ltd. 2019-09-19 17:00:04 [runtime] (ready) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION 2019-09-19 17:00:04 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION.fork0.chnk0.main 2019-09-19 17:00:04 [runtime] (ready) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES 2019-09-19 17:00:05 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES.fork0.chnk0.main 2019-09-19 17:00:06 [runtime] (ready) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY 2019-09-19 17:00:07 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0.main 2019-09-19 17:00:07 [runtime] (chunks_complete) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION 2019-09-19 17:00:09 [runtime] (chunks_complete) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES 2019-09-19 17:00:10 [runtime] (progress) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0: Found genome FASTA index.... 2019-09-19 17:00:13 [runtime] (progress) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0: Building transcriptome... 2019-09-19 17:01:11 [runtime] (progress) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0: Building kmer index... 2019-09-19 17:07:24 [runtime] (progress) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0: Mapping reads... 2019-09-19 17:07:48 [runtime] (chunks_complete) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY 2019-09-19 17:07:49 [runtime] (ready) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS 2019-09-19 17:07:49 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS.fork0.chnk0.main 2019-09-19 17:07:52 [runtime] (chunks_complete) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS 2019-09-19 17:07:53 [runtime] (ready) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY 2019-09-19 17:07:53 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY.fork0.split 2019-09-19 17:07:53 [runtime] (ready) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS 2019-09-19 17:07:53 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.split 2019-09-19 17:07:55 [runtime] (split_complete) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS 2019-09-19 17:07:55 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.chnk0.main 2019-09-19 17:07:56 [runtime] (split_complete) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY 2019-09-19 17:07:56 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY.fork0.join 2019-09-19 17:07:59 [runtime] (join_complete) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY 2019-09-19 17:13:58 [runtime] (update) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0 chunks_running 2019-09-19 17:20:00 [runtime] (update) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0 chunks_running 2019-09-19 17:23:16 [runtime] (chunks_complete) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS 2019-09-19 17:23:16 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.join 2019-09-19 17:23:18 [runtime] (join_complete) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS 2019-09-19 17:23:19 [runtime] (ready) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS 2019-09-19 17:23:19 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.split 2019-09-19 17:23:22 [runtime] (split_complete) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS 2019-09-19 17:23:26 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk00.main 2019-09-19 17:23:27 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk01.main 2019-09-19 17:23:27 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk02.main 2019-09-19 17:23:28 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk03.main 2019-09-19 17:23:28 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk04.main 2019-09-19 17:23:29 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk05.main 2019-09-19 17:23:29 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk06.main 2019-09-19 17:23:30 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk07.main 2019-09-19 17:23:30 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk08.main 2019-09-19 17:23:31 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk09.main 2019-09-19 17:23:31 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk10.main 2019-09-19 17:23:32 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk11.main 2019-09-19 17:23:33 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk12.main 2019-09-19 17:23:33 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk13.main 2019-09-19 17:23:34 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk14.main 2019-09-19 17:23:34 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk15.main 2019-09-19 17:23:35 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk16.main 2019-09-19 17:23:35 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk17.main 2019-09-19 17:23:36 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk18.main 2019-09-19 17:23:36 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk19.main 2019-09-19 17:23:37 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk20.main 2019-09-19 17:23:37 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk21.main 2019-09-19 17:23:38 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk22.main 2019-09-19 17:23:38 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk23.main 2019-09-19 17:23:39 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk24.main 2019-09-19 17:23:40 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk25.main 2019-09-19 17:23:40 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk26.main 2019-09-19 17:23:41 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk27.main 2019-09-19 17:23:41 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk28.main 2019-09-19 17:23:42 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk29.main 2019-09-19 17:23:42 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk30.main 2019-09-19 17:23:44 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk31.main 2019-09-19 17:23:44 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk32.main 2019-09-19 17:23:44 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk33.main 2019-09-19 17:23:44 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk34.main 2019-09-19 17:23:45 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk35.main 2019-09-19 17:23:45 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk36.main 2019-09-19 17:23:45 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk37.main 2019-09-19 17:23:45 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk38.main 2019-09-19 17:23:45 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk39.main 2019-09-19 17:23:46 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk40.main 2019-09-19 17:23:46 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk41.main 2019-09-19 17:23:46 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk42.main 2019-09-19 17:23:46 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk43.main 2019-09-19 17:23:46 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk44.main 2019-09-19 17:23:47 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk45.main 2019-09-19 17:23:47 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk46.main 2019-09-19 17:23:47 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk47.main 2019-09-19 17:23:47 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk48.main 2019-09-19 17:23:47 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk49.main 2019-09-19 17:23:48 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk50.main 2019-09-19 17:23:48 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk51.main 2019-09-19 17:29:37 [runtime] (update) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0 chunks running (0/52 completed) 2019-09-19 17:35:15 [runtime] (update) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0 chunks running (28/52 completed) 2019-09-19 17:39:45 [runtime] (chunks_complete) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS 2019-09-19 17:39:46 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.join 2019-09-19 17:41:13 [runtime] (join_complete) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS 2019-09-19 17:41:25 [runtime] (ready) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS 2019-09-19 17:41:25 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.split 2019-09-19 17:41:28 [runtime] (split_complete) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS 2019-09-19 17:41:31 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk00.main 2019-09-19 17:41:32 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk01.main 2019-09-19 17:41:32 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk02.main 2019-09-19 17:41:33 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk03.main 2019-09-19 17:41:33 [runtime] (run:local) 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ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk54.main 2019-09-19 20:41:14 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk55.main 2019-09-19 20:41:16 [runtime] (chunks_complete) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT 2019-09-19 20:41:19 [runtime] (ready) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX 2019-09-19 20:41:20 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX.fork0.split 2019-09-19 20:45:18 [runtime] (split_complete) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX 2019-09-19 20:45:20 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX.fork0.join 2019-09-19 20:45:29 [runtime] (join_complete) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX 2019-09-19 20:45:31 [runtime] (ready) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA 2019-09-19 20:45:32 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA.fork0.split 2019-09-19 20:45:32 [runtime] (ready) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS 2019-09-19 20:45:33 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS.fork0.split 2019-09-19 20:45:34 [runtime] (ready) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_FBPCA 2019-09-19 20:45:35 [runtime] (disabled) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_FBPCA 2019-09-19 20:45:36 [runtime] (ready) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH 2019-09-19 20:45:36 [runtime] (disabled) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH 2019-09-19 20:45:38 [runtime] (split_complete) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA 2019-09-19 20:45:38 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA.fork0.chnk0.main 2019-09-19 20:45:39 [runtime] (split_complete) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS 2019-09-19 20:45:39 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS.fork0.join 2019-09-19 20:45:44 [runtime] (join_complete) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS 2019-09-19 20:45:48 [runtime] (chunks_complete) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA 2019-09-19 20:45:50 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA.fork0.join 2019-09-19 20:45:58 [runtime] (join_complete) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA 2019-09-19 20:45:59 [runtime] (ready) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT 2019-09-19 20:46:00 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT.fork0.chnk0.main 2019-09-19 20:46:05 [runtime] (chunks_complete) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT 2019-09-19 20:46:08 [runtime] (update) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running 2019-09-19 20:46:08 [runtime] (ready) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS 2019-09-19 20:46:09 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.split 2019-09-19 20:46:09 [runtime] (ready) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING 2019-09-19 20:46:09 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.split 2019-09-19 20:46:12 [runtime] (ready) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE 2019-09-19 20:46:12 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE.fork0.split 2019-09-19 20:46:13 [runtime] (ready) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP 2019-09-19 20:46:14 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP.fork0.split 2019-09-19 20:46:17 [runtime] (split_complete) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS 2019-09-19 20:46:22 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk0.main 2019-09-19 20:46:23 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk1.main 2019-09-19 20:46:23 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk2.main 2019-09-19 20:46:24 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk3.main 2019-09-19 20:46:25 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk4.main 2019-09-19 20:46:26 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk5.main 2019-09-19 20:46:27 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk6.main 2019-09-19 20:46:28 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk7.main 2019-09-19 20:46:28 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk8.main 2019-09-19 20:46:39 [runtime] (split_complete) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING 2019-09-19 20:46:39 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.chnk0.main 2019-09-19 20:46:40 [runtime] (split_complete) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP 2019-09-19 20:46:41 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP.fork0.chnk0.main 2019-09-19 20:46:41 [runtime] (split_complete) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE 2019-09-19 20:46:43 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE.fork0.chnk0.main 2019-09-19 20:46:48 [runtime] (update) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0 chunks running (49/56 completed) 2019-09-19 20:46:48 [runtime] (chunks_complete) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS 2019-09-19 20:46:50 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.join 2019-09-19 20:46:52 [runtime] (chunks_complete) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING 2019-09-19 20:46:53 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.join 2019-09-19 20:46:54 [runtime] (chunks_complete) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE 2019-09-19 20:46:55 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE.fork0.join 2019-09-19 20:46:58 [runtime] (chunks_complete) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP 2019-09-19 20:46:59 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP.fork0.join 2019-09-19 20:47:04 [runtime] (join_complete) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE 2019-09-19 20:47:06 [runtime] (join_complete) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS 2019-09-19 20:47:09 [runtime] (join_complete) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING 2019-09-19 20:47:09 [runtime] (join_complete) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP 2019-09-19 20:47:11 [runtime] (ready) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS 2019-09-19 20:47:12 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS.fork0.split 2019-09-19 20:47:12 [runtime] (chunks_complete) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES 2019-09-19 20:47:13 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.join 2019-09-19 20:47:17 [runtime] (split_complete) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS 2019-09-19 20:47:17 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS.fork0.chnk0.main 2019-09-19 20:47:23 [runtime] (chunks_complete) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS 2019-09-19 20:47:24 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS.fork0.join 2019-09-19 20:47:33 [runtime] (join_complete) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS 2019-09-19 20:47:34 [runtime] (ready) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING 2019-09-19 20:47:35 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING.fork0.chnk0.main 2019-09-19 20:47:44 [runtime] (chunks_complete) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING 2019-09-19 20:47:47 [runtime] (ready) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION 2019-09-19 20:47:47 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.split 2019-09-19 20:47:52 [runtime] (split_complete) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION 2019-09-19 20:47:53 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk00.main 2019-09-19 20:47:54 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk01.main 2019-09-19 20:47:54 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk02.main 2019-09-19 20:47:55 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk03.main 2019-09-19 20:47:56 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk04.main 2019-09-19 20:47:57 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk05.main 2019-09-19 20:47:58 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk06.main 2019-09-19 20:47:59 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk07.main 2019-09-19 20:47:59 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk08.main 2019-09-19 20:48:00 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk09.main 2019-09-19 20:49:02 [runtime] (join_complete) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES 2019-09-19 20:49:08 [runtime] (ready) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS 2019-09-19 20:49:08 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS.fork0.split 2019-09-19 20:49:08 [runtime] (chunks_complete) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION 2019-09-19 20:49:09 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.join 2019-09-19 20:49:14 [runtime] (split_complete) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS 2019-09-19 20:49:15 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS.fork0.chnk0.main 2019-09-19 20:49:23 [runtime] (join_complete) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION 2019-09-19 20:49:26 [runtime] (ready) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS 2019-09-19 20:49:26 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS.fork0.split 2019-09-19 20:49:29 [runtime] (split_complete) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS 2019-09-19 20:49:29 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS.fork0.chnk0.main 2019-09-19 20:49:46 [runtime] (chunks_complete) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS 2019-09-19 20:49:47 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS.fork0.join 2019-09-19 20:50:04 [runtime] (join_complete) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS 2019-09-19 20:52:09 [runtime] (update) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running 2019-09-19 20:53:40 [runtime] (chunks_complete) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS 2019-09-19 20:53:40 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS.fork0.join 2019-09-19 20:53:45 [runtime] (join_complete) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS 2019-09-19 20:53:46 [runtime] (ready) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS 2019-09-19 20:53:46 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS.fork0.split 2019-09-19 20:53:50 [runtime] (split_complete) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS 2019-09-19 20:53:51 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS.fork0.chnk0.main 2019-09-19 20:53:55 [runtime] (chunks_complete) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS 2019-09-19 20:53:55 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS.fork0.join 2019-09-19 20:54:00 [runtime] (join_complete) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS 2019-09-19 20:54:07 [runtime] (ready) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.CALL_PROTOSPACERS 2019-09-19 20:54:07 [runtime] (disabled) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.CALL_PROTOSPACERS 2019-09-19 20:54:08 [runtime] (ready) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS 2019-09-19 20:54:09 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS.fork0.chnk0.main 2019-09-19 20:54:09 [runtime] (ready) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE 2019-09-19 20:54:09 [runtime] (disabled) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE 2019-09-19 20:54:09 [runtime] (ready) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET 2019-09-19 20:54:09 [runtime] (disabled) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET 2019-09-19 20:54:10 [runtime] (ready) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS 2019-09-19 20:54:11 [runtime] (disabled) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS 2019-09-19 20:54:12 [runtime] (disabled) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER 2019-09-19 20:54:28 [runtime] (chunks_complete) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS 2019-09-19 20:54:33 [runtime] (ready) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS 2019-09-19 20:54:33 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS.fork0.split 2019-09-19 20:54:37 [runtime] (split_complete) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS 2019-09-19 20:54:37 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS.fork0.chnk0.main 2019-09-19 20:54:51 [runtime] (chunks_complete) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS 2019-09-19 20:54:51 [runtime] (run:local) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS.fork0.join 2019-09-19 20:54:56 [runtime] (join_complete) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS 2019-09-19 20:58:10 [runtime] (update) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running 2019-09-19 21:04:10 [runtime] (update) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running 2019-09-19 21:09:05 [runtime] (join_complete) ID.10X_G171B_pcg_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS Outputs: - Run summary HTML: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171B_pcg_only_UseThis/outs/web_summary.html - Run summary CSV: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171B_pcg_only_UseThis/outs/metrics_summary.csv - BAM: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171B_pcg_only_UseThis/outs/possorted_genome_bam.bam - BAM index: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171B_pcg_only_UseThis/outs/possorted_genome_bam.bam.bai - Filtered feature-barcode matrices MEX: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171B_pcg_only_UseThis/outs/filtered_feature_bc_matrix - Filtered feature-barcode matrices HDF5: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171B_pcg_only_UseThis/outs/filtered_feature_bc_matrix.h5 - Unfiltered feature-barcode matrices MEX: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171B_pcg_only_UseThis/outs/raw_feature_bc_matrix - Unfiltered feature-barcode matrices HDF5: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171B_pcg_only_UseThis/outs/raw_feature_bc_matrix.h5 - Secondary analysis output CSV: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171B_pcg_only_UseThis/outs/analysis - Per-molecule read information: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171B_pcg_only_UseThis/outs/molecule_info.h5 - CRISPR-specific analysis: null - Loupe Cell Browser file: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171B_pcg_only_UseThis/outs/cloupe.cloupe - Feature Reference: null Waiting 6 seconds for UI to do final refresh. Pipestance completed successfully! 2019-09-19 21:09:27 Shutting down. Saving pipestance info to "10X_G171B_pcg_only_UseThis/10X_G171B_pcg_only_UseThis.mri.tgz" Finished .............. Thu Sep 19 21:10:30 EDT 2019