========================================================== Starting on : Thu Sep 19 12:30:04 EDT 2019 Running on node : scc-wk2 Current job ID : 9439438 Current job name : dropseq_10X_G171B_lnconly_UseThis_omp28 Task index number : ========================================================== /share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/bin cellranger count (3.1.0) Copyright (c) 2019 10x Genomics, Inc. All rights reserved. ------------------------------------------------------------------------------- Martian Runtime - '3.1.0-v3.2.3' Serving UI at http://scc-wk2:42955?auth=9s-UAZErg7867oVSyCGO-U8KBpqTXHbbM09-u3PbdFs Running preflight checks (please wait)... 2019-09-19 12:30:09 [runtime] (ready) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF 2019-09-19 12:30:10 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF.fork0.chnk0.main 2019-09-19 12:30:23 [runtime] (chunks_complete) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF Checking sample info... Checking FASTQ folder... Checking libraries... Checking reference... Checking reference_path (/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/ref/mm10_ensmbl/mm10_premrna_v1.0_lnc-only) on scc-wk2... Checking chemistry... Checking optional arguments... mrc: '3.1.0-v3.2.3' mrp: '3.1.0-v3.2.3' Anaconda: Python 2.7.14 :: Anaconda, Inc. numpy: 1.14.2 scipy: 1.0.1 pysam: 0.14.1 h5py: 2.8.0 pandas: 0.22.0 STAR: STAR_2.5.1b samtools: samtools 1.7 Using htslib 1.7 Copyright (C) 2018 Genome Research Ltd. 2019-09-19 12:30:33 [runtime] (ready) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES 2019-09-19 12:30:33 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES.fork0.chnk0.main 2019-09-19 12:30:33 [runtime] (ready) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY 2019-09-19 12:30:34 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0.main 2019-09-19 12:30:34 [runtime] (ready) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION 2019-09-19 12:30:35 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION.fork0.chnk0.main 2019-09-19 12:30:35 [runtime] (chunks_complete) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES 2019-09-19 12:30:36 [runtime] (progress) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0: Found genome FASTA index.... 2019-09-19 12:30:37 [runtime] (progress) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0: Building transcriptome... 2019-09-19 12:30:37 [runtime] (chunks_complete) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION 2019-09-19 12:31:35 [runtime] (progress) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0: Building kmer index... 2019-09-19 12:32:14 [runtime] (progress) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0: Mapping reads... 2019-09-19 12:32:25 [runtime] (chunks_complete) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY 2019-09-19 12:32:27 [runtime] (ready) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS 2019-09-19 12:32:28 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS.fork0.chnk0.main 2019-09-19 12:32:30 [runtime] (chunks_complete) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS 2019-09-19 12:32:31 [runtime] (ready) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY 2019-09-19 12:32:31 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY.fork0.split 2019-09-19 12:32:31 [runtime] (ready) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS 2019-09-19 12:32:32 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.split 2019-09-19 12:32:33 [runtime] (split_complete) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS 2019-09-19 12:32:34 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.chnk0.main 2019-09-19 12:32:34 [runtime] (split_complete) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY 2019-09-19 12:32:34 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY.fork0.join 2019-09-19 12:32:47 [runtime] (join_complete) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY 2019-09-19 12:38:37 [runtime] (update) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0 chunks_running 2019-09-19 12:44:42 [runtime] (update) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0 chunks_running 2019-09-19 12:50:45 [runtime] (update) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0 chunks_running 2019-09-19 12:55:15 [runtime] (chunks_complete) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS 2019-09-19 12:55:16 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.join 2019-09-19 12:55:19 [runtime] (join_complete) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS 2019-09-19 12:55:22 [runtime] (ready) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS 2019-09-19 12:55:22 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.split 2019-09-19 12:55:29 [runtime] (split_complete) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS 2019-09-19 12:55:33 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk00.main 2019-09-19 12:55:33 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk01.main 2019-09-19 12:55:34 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk02.main 2019-09-19 12:55:34 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk03.main 2019-09-19 12:55:35 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk04.main 2019-09-19 12:55:35 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk05.main 2019-09-19 12:55:36 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk06.main 2019-09-19 12:55:36 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk07.main 2019-09-19 12:55:37 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk08.main 2019-09-19 12:55:39 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk09.main 2019-09-19 12:55:39 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk10.main 2019-09-19 12:55:40 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk11.main 2019-09-19 12:55:41 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk12.main 2019-09-19 12:55:42 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk13.main 2019-09-19 12:55:42 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk14.main 2019-09-19 12:55:43 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk15.main 2019-09-19 12:55:44 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk16.main 2019-09-19 12:55:44 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk17.main 2019-09-19 12:55:45 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk18.main 2019-09-19 12:55:45 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk19.main 2019-09-19 12:55:46 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk20.main 2019-09-19 12:55:47 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk21.main 2019-09-19 12:55:47 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk22.main 2019-09-19 12:55:48 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk23.main 2019-09-19 12:55:48 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk24.main 2019-09-19 12:55:48 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk25.main 2019-09-19 12:55:49 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk26.main 2019-09-19 12:55:49 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk27.main 2019-09-19 12:55:51 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk28.main 2019-09-19 12:55:51 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk29.main 2019-09-19 12:55:52 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk30.main 2019-09-19 12:55:53 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk31.main 2019-09-19 12:55:53 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk32.main 2019-09-19 12:55:53 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk33.main 2019-09-19 12:55:54 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk34.main 2019-09-19 12:55:54 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk35.main 2019-09-19 12:55:54 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk36.main 2019-09-19 12:55:54 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk37.main 2019-09-19 12:55:55 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk38.main 2019-09-19 12:55:55 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk39.main 2019-09-19 12:55:55 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk40.main 2019-09-19 12:55:55 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk41.main 2019-09-19 12:55:56 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk42.main 2019-09-19 12:55:56 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk43.main 2019-09-19 12:55:56 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk44.main 2019-09-19 12:55:56 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk45.main 2019-09-19 12:55:57 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk46.main 2019-09-19 12:55:57 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk47.main 2019-09-19 12:55:57 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk48.main 2019-09-19 12:55:57 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk49.main 2019-09-19 12:55:58 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk50.main 2019-09-19 12:55:59 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk51.main 2019-09-19 13:01:46 [runtime] (update) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0 chunks running (0/52 completed) 2019-09-19 13:06:50 [runtime] (update) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0 chunks running (23/52 completed) 2019-09-19 13:11:54 [runtime] (update) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0 chunks running (28/52 completed) 2019-09-19 13:15:07 [runtime] (chunks_complete) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS 2019-09-19 13:15:09 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.join 2019-09-19 13:16:36 [runtime] (join_complete) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS 2019-09-19 13:16:47 [runtime] (ready) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS 2019-09-19 13:16:47 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.split 2019-09-19 13:16:50 [runtime] (split_complete) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS 2019-09-19 13:16:54 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk00.main 2019-09-19 13:16:54 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk01.main 2019-09-19 13:16:55 [runtime] (run:local) 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ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES 2019-09-19 16:21:59 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.join 2019-09-19 16:27:06 [runtime] (update) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running 2019-09-19 16:28:03 [runtime] (update) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0 join_running 2019-09-19 16:32:52 [runtime] (join_complete) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES 2019-09-19 16:33:03 [runtime] (ready) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES 2019-09-19 16:33:04 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES.fork0.split 2019-09-19 16:33:07 [runtime] (update) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running 2019-09-19 16:33:08 [runtime] (split_complete) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES 2019-09-19 16:33:09 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES.fork0.join 2019-09-19 16:34:41 [runtime] (join_complete) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES 2019-09-19 16:34:44 [runtime] (ready) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES 2019-09-19 16:34:44 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.split 2019-09-19 16:34:45 [runtime] (ready) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT 2019-09-19 16:34:46 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT.fork0.chnk0.main 2019-09-19 16:34:49 [runtime] (split_complete) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES 2019-09-19 16:34:58 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk00.main 2019-09-19 16:34:59 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk01.main 2019-09-19 16:34:59 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk02.main 2019-09-19 16:35:00 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk03.main 2019-09-19 16:35:01 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk04.main 2019-09-19 16:35:02 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk05.main 2019-09-19 16:35:03 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk06.main 2019-09-19 16:35:05 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk07.main 2019-09-19 16:35:06 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk08.main 2019-09-19 16:35:07 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk09.main 2019-09-19 16:35:08 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk10.main 2019-09-19 16:35:09 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk11.main 2019-09-19 16:35:10 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk12.main 2019-09-19 16:35:11 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk13.main 2019-09-19 16:35:12 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk14.main 2019-09-19 16:35:13 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk15.main 2019-09-19 16:35:14 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk16.main 2019-09-19 16:35:15 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk17.main 2019-09-19 16:35:16 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk18.main 2019-09-19 16:35:16 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk19.main 2019-09-19 16:35:18 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk20.main 2019-09-19 16:35:18 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk21.main 2019-09-19 16:35:19 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk22.main 2019-09-19 16:35:20 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk23.main 2019-09-19 16:35:21 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk24.main 2019-09-19 16:35:21 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk25.main 2019-09-19 16:35:22 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk26.main 2019-09-19 16:35:22 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk27.main 2019-09-19 16:35:23 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk28.main 2019-09-19 16:35:23 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk29.main 2019-09-19 16:35:24 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk30.main 2019-09-19 16:35:24 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk31.main 2019-09-19 16:35:25 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk32.main 2019-09-19 16:35:25 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk33.main 2019-09-19 16:35:26 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk34.main 2019-09-19 16:35:26 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk35.main 2019-09-19 16:35:27 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk36.main 2019-09-19 16:35:27 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk37.main 2019-09-19 16:35:28 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk38.main 2019-09-19 16:35:28 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk39.main 2019-09-19 16:35:29 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk40.main 2019-09-19 16:35:29 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk41.main 2019-09-19 16:35:30 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk42.main 2019-09-19 16:35:30 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk43.main 2019-09-19 16:35:30 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk44.main 2019-09-19 16:35:31 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk45.main 2019-09-19 16:35:31 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk46.main 2019-09-19 16:35:32 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk47.main 2019-09-19 16:35:32 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk48.main 2019-09-19 16:35:33 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk49.main 2019-09-19 16:35:33 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk50.main 2019-09-19 16:35:34 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk51.main 2019-09-19 16:35:38 [runtime] (chunks_complete) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT 2019-09-19 16:35:40 [runtime] (ready) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX 2019-09-19 16:35:40 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX.fork0.split 2019-09-19 16:38:43 [runtime] (split_complete) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX 2019-09-19 16:38:44 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX.fork0.join 2019-09-19 16:38:50 [runtime] (join_complete) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX 2019-09-19 16:38:52 [runtime] (ready) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA 2019-09-19 16:38:52 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA.fork0.split 2019-09-19 16:38:52 [runtime] (ready) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_FBPCA 2019-09-19 16:38:53 [runtime] (disabled) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_FBPCA 2019-09-19 16:38:53 [runtime] (ready) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS 2019-09-19 16:38:53 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS.fork0.split 2019-09-19 16:38:55 [runtime] (ready) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH 2019-09-19 16:38:55 [runtime] (disabled) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH 2019-09-19 16:38:57 [runtime] (split_complete) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA 2019-09-19 16:38:57 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA.fork0.chnk0.main 2019-09-19 16:38:58 [runtime] (split_complete) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS 2019-09-19 16:38:58 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS.fork0.join 2019-09-19 16:39:04 [runtime] (join_complete) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS 2019-09-19 16:39:06 [runtime] (chunks_complete) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA 2019-09-19 16:39:07 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA.fork0.join 2019-09-19 16:39:09 [runtime] (update) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running 2019-09-19 16:39:14 [runtime] (join_complete) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA 2019-09-19 16:39:17 [runtime] (ready) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT 2019-09-19 16:39:18 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT.fork0.chnk0.main 2019-09-19 16:39:24 [runtime] (chunks_complete) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT 2019-09-19 16:39:29 [runtime] (ready) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS 2019-09-19 16:39:29 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.split 2019-09-19 16:39:30 [runtime] (ready) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE 2019-09-19 16:39:30 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE.fork0.split 2019-09-19 16:39:31 [runtime] (ready) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING 2019-09-19 16:39:31 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.split 2019-09-19 16:39:32 [runtime] (ready) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP 2019-09-19 16:39:32 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP.fork0.split 2019-09-19 16:39:39 [runtime] (split_complete) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS 2019-09-19 16:39:41 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk0.main 2019-09-19 16:39:41 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk1.main 2019-09-19 16:39:42 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk2.main 2019-09-19 16:39:44 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk3.main 2019-09-19 16:39:45 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk4.main 2019-09-19 16:39:46 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk5.main 2019-09-19 16:39:47 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk6.main 2019-09-19 16:39:47 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk7.main 2019-09-19 16:39:48 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk8.main 2019-09-19 16:39:58 [runtime] (split_complete) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE 2019-09-19 16:39:58 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE.fork0.chnk0.main 2019-09-19 16:39:59 [runtime] (split_complete) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING 2019-09-19 16:40:00 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.chnk0.main 2019-09-19 16:40:00 [runtime] (split_complete) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP 2019-09-19 16:40:00 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP.fork0.chnk0.main 2019-09-19 16:40:04 [runtime] (chunks_complete) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS 2019-09-19 16:40:06 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.join 2019-09-19 16:40:08 [runtime] (chunks_complete) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES 2019-09-19 16:40:09 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.join 2019-09-19 16:40:10 [runtime] (chunks_complete) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE 2019-09-19 16:40:10 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE.fork0.join 2019-09-19 16:40:10 [runtime] (chunks_complete) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING 2019-09-19 16:40:11 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.join 2019-09-19 16:40:16 [runtime] (join_complete) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS 2019-09-19 16:40:19 [runtime] (join_complete) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE 2019-09-19 16:40:21 [runtime] (chunks_complete) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP 2019-09-19 16:40:22 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP.fork0.join 2019-09-19 16:40:22 [runtime] (join_complete) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING 2019-09-19 16:40:24 [runtime] (ready) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS 2019-09-19 16:40:25 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS.fork0.split 2019-09-19 16:40:29 [runtime] (join_complete) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP 2019-09-19 16:40:29 [runtime] (split_complete) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS 2019-09-19 16:40:30 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS.fork0.chnk0.main 2019-09-19 16:40:33 [runtime] (chunks_complete) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS 2019-09-19 16:40:34 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS.fork0.join 2019-09-19 16:40:42 [runtime] (join_complete) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS 2019-09-19 16:40:42 [runtime] (ready) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING 2019-09-19 16:40:44 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING.fork0.chnk0.main 2019-09-19 16:40:51 [runtime] (chunks_complete) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING 2019-09-19 16:40:54 [runtime] (ready) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION 2019-09-19 16:40:54 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.split 2019-09-19 16:40:59 [runtime] (split_complete) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION 2019-09-19 16:41:01 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk00.main 2019-09-19 16:41:01 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk01.main 2019-09-19 16:41:02 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk02.main 2019-09-19 16:41:03 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk03.main 2019-09-19 16:41:03 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk04.main 2019-09-19 16:41:04 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk05.main 2019-09-19 16:41:06 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk06.main 2019-09-19 16:41:06 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk07.main 2019-09-19 16:41:07 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk08.main 2019-09-19 16:41:07 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk09.main 2019-09-19 16:41:19 [runtime] (join_complete) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES 2019-09-19 16:41:25 [runtime] (ready) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS 2019-09-19 16:41:25 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS.fork0.split 2019-09-19 16:41:31 [runtime] (split_complete) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS 2019-09-19 16:41:32 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS.fork0.chnk0.main 2019-09-19 16:41:39 [runtime] (chunks_complete) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION 2019-09-19 16:41:40 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.join 2019-09-19 16:41:48 [runtime] (join_complete) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION 2019-09-19 16:41:52 [runtime] (ready) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS 2019-09-19 16:41:52 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS.fork0.split 2019-09-19 16:41:56 [runtime] (split_complete) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS 2019-09-19 16:41:56 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS.fork0.chnk0.main 2019-09-19 16:42:13 [runtime] (chunks_complete) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS 2019-09-19 16:42:13 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS.fork0.join 2019-09-19 16:42:22 [runtime] (chunks_complete) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS 2019-09-19 16:42:23 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS.fork0.join 2019-09-19 16:42:26 [runtime] (join_complete) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS 2019-09-19 16:42:31 [runtime] (join_complete) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS 2019-09-19 16:42:32 [runtime] (ready) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS 2019-09-19 16:42:33 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS.fork0.split 2019-09-19 16:42:39 [runtime] (split_complete) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS 2019-09-19 16:42:39 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS.fork0.chnk0.main 2019-09-19 16:42:43 [runtime] (chunks_complete) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS 2019-09-19 16:42:43 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS.fork0.join 2019-09-19 16:42:46 [runtime] (join_complete) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS 2019-09-19 16:42:52 [runtime] (ready) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.CALL_PROTOSPACERS 2019-09-19 16:42:52 [runtime] (disabled) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.CALL_PROTOSPACERS 2019-09-19 16:42:53 [runtime] (ready) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE 2019-09-19 16:42:53 [runtime] (disabled) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE 2019-09-19 16:42:53 [runtime] (ready) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET 2019-09-19 16:42:53 [runtime] (disabled) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET 2019-09-19 16:42:53 [runtime] (ready) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS 2019-09-19 16:42:54 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS.fork0.chnk0.main 2019-09-19 16:42:55 [runtime] (ready) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS 2019-09-19 16:42:55 [runtime] (disabled) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS 2019-09-19 16:42:56 [runtime] (disabled) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER 2019-09-19 16:43:11 [runtime] (chunks_complete) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS 2019-09-19 16:43:15 [runtime] (ready) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS 2019-09-19 16:43:15 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS.fork0.split 2019-09-19 16:43:18 [runtime] (split_complete) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS 2019-09-19 16:43:18 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS.fork0.chnk0.main 2019-09-19 16:43:25 [runtime] (chunks_complete) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS 2019-09-19 16:43:26 [runtime] (run:local) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS.fork0.join 2019-09-19 16:43:29 [runtime] (join_complete) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS 2019-09-19 16:45:08 [runtime] (update) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running 2019-09-19 16:51:10 [runtime] (update) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running 2019-09-19 16:57:13 [runtime] (update) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running 2019-09-19 16:57:29 [runtime] (join_complete) ID.10X_G171B_lnc_only_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS Outputs: - Run summary HTML: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171B_lnc_only_UseThis/outs/web_summary.html - Run summary CSV: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171B_lnc_only_UseThis/outs/metrics_summary.csv - BAM: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171B_lnc_only_UseThis/outs/possorted_genome_bam.bam - BAM index: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171B_lnc_only_UseThis/outs/possorted_genome_bam.bam.bai - Filtered feature-barcode matrices MEX: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171B_lnc_only_UseThis/outs/filtered_feature_bc_matrix - Filtered feature-barcode matrices HDF5: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171B_lnc_only_UseThis/outs/filtered_feature_bc_matrix.h5 - Unfiltered feature-barcode matrices MEX: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171B_lnc_only_UseThis/outs/raw_feature_bc_matrix - Unfiltered feature-barcode matrices HDF5: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171B_lnc_only_UseThis/outs/raw_feature_bc_matrix.h5 - Secondary analysis output CSV: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171B_lnc_only_UseThis/outs/analysis - Per-molecule read information: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171B_lnc_only_UseThis/outs/molecule_info.h5 - CRISPR-specific analysis: null - Loupe Cell Browser file: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171B_lnc_only_UseThis/outs/cloupe.cloupe - Feature Reference: null Waiting 6 seconds for UI to do final refresh. Pipestance completed successfully! 2019-09-19 16:57:49 Shutting down. Saving pipestance info to "10X_G171B_lnc_only_UseThis/10X_G171B_lnc_only_UseThis.mri.tgz" Finished .............. Thu Sep 19 16:58:43 EDT 2019