#!/bin/bash
#
#$ -cwd
#$ -j y
#$ -P waxmanlab
#$ -m be
#$ -M kkarri@bu.edu
#$ -o G171_G172_h5.log
#$ -N G171_G172_h5
#$ -pe mpi_28_tasks_per_node 224
#$ -l h_rt=72:00:00

echo "=========================================================="
echo "Starting on       : $(date)"
echo "Running on node   : $(hostname)"
echo "Current job ID    : $JOB_ID"
echo "Current job name  : $JOB_NAME"
echo "Task index number : $TASK_ID"
echo "=========================================================="

source ~/.bashrc
module load R/3.6.0
module load gcc/8.3.0
echo "Copy"
mpirun -np $NSLOTS Rscript /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_premrna_G171B_mm10_ensembl_onlyPCG_transcript_UseThis/G171_parse_molInfoH5.R
 
#Rscript /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_premrna_G171B_mm10_ensembl_onlyPCG_transcript_UseThis/G172-G171_h5_file.R 
 
echo "Finished  .............. $(date)"