[
    {
        "name": "SC_RNA_COUNTER_CS",
        "fqname": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS",
        "type": "pipeline",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": null,
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "chemistry",
                            "type": "string",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "chemistry",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "auto",
                            "waiting": false
                        },
                        {
                            "id": "recovered_cells",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "recovered_cells",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "no_secondary_analysis",
                            "type": "bool",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "no_secondary_analysis",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "sample_desc",
                            "type": "string",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_desc",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "",
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/ref/mm9/mm9_usethis",
                            "waiting": false
                        },
                        {
                            "id": "force_cells",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "force_cells",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": 2000,
                            "waiting": false
                        },
                        {
                            "id": "r1_length",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "r1_length",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "r2_length",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "r2_length",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "feature_reference",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "sample_id",
                            "type": "string",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_id",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "10X_G171C_mm9_2000",
                            "waiting": false
                        },
                        {
                            "id": "sample_def",
                            "type": "map",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_def",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "fastq_mode": "ILMN_BCL2FASTQ",
                                    "gem_group": null,
                                    "lanes": null,
                                    "read_path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/H3LTJBBXX/10X_G171C_MissingLibrary_1_H3LTJBBXX",
                                    "sample_indices": [
                                        "any"
                                    ],
                                    "sample_names": [
                                        "G171C"
                                    ]
                                }
                            ],
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "possorted_genome_bam",
                            "type": "bam",
                            "valexp": "SC_RNA_COUNTER.possorted_genome_bam",
                            "mode": "reference",
                            "output": "output",
                            "sweep": false,
                            "sweepRootId": "possorted_genome_bam",
                            "node": "SORT_BY_POS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/join-u5c5a742052/files/output.bam",
                            "waiting": false
                        },
                        {
                            "id": "metrics_summary",
                            "type": "csv",
                            "valexp": "SC_RNA_COUNTER.metrics_summary_csv",
                            "mode": "reference",
                            "output": "metrics_summary_csv",
                            "sweep": false,
                            "sweepRootId": "metrics_summary",
                            "node": "SUMMARIZE_REPORTS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SUMMARIZE_REPORTS/fork0/chnk0-u5c5a7429fb/files/metrics_summary_csv.csv",
                            "waiting": false
                        },
                        {
                            "id": "raw_feature_bc_matrix",
                            "type": "path",
                            "valexp": "SC_RNA_COUNTER.raw_gene_bc_matrices_mex",
                            "mode": "reference",
                            "output": "matrices_mex",
                            "sweep": false,
                            "sweepRootId": "raw_feature_bc_matrix",
                            "node": "COUNT_GENES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/join-u5c5a742053/files/matrices_mex",
                            "waiting": false
                        },
                        {
                            "id": "filtered_feature_bc_matrix",
                            "type": "path",
                            "valexp": "SC_RNA_COUNTER.filtered_gene_bc_matrices_mex",
                            "mode": "reference",
                            "output": "filtered_matrices_mex",
                            "sweep": false,
                            "sweepRootId": "filtered_feature_bc_matrix",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-u5c5a742785/files/filtered_matrices_mex",
                            "waiting": false
                        },
                        {
                            "id": "filtered_feature_bc_matrix_h5",
                            "type": "h5",
                            "valexp": "SC_RNA_COUNTER.filtered_gene_bc_matrices_h5",
                            "mode": "reference",
                            "output": "filtered_matrices_h5",
                            "sweep": false,
                            "sweepRootId": "filtered_feature_bc_matrix_h5",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-u5c5a742785/files/filtered_matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "molecule_info",
                            "type": "h5",
                            "valexp": "SC_RNA_COUNTER.molecule_info",
                            "mode": "reference",
                            "output": "output",
                            "sweep": false,
                            "sweepRootId": "molecule_info",
                            "node": "REPORT_MOLECULES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/join-u5c5a7427d0/files/output.h5",
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "valexp": "SC_RNA_COUNTER.feature_reference",
                            "mode": "reference",
                            "output": "feature_reference",
                            "sweep": false,
                            "sweepRootId": "feature_reference",
                            "node": "SUMMARIZE_REPORTS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SUMMARIZE_REPORTS/fork0/chnk0-u5c5a7429fb/files/feature_reference.csv",
                            "waiting": false
                        },
                        {
                            "id": "possorted_genome_bam_index",
                            "type": "bam.bai",
                            "valexp": "SC_RNA_COUNTER.possorted_genome_bam_index",
                            "mode": "reference",
                            "output": "index",
                            "sweep": false,
                            "sweepRootId": "possorted_genome_bam_index",
                            "node": "SORT_BY_POS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/join-u5c5a742052/files/output.bam.bai",
                            "waiting": false
                        },
                        {
                            "id": "web_summary",
                            "type": "html",
                            "valexp": "SC_RNA_COUNTER.web_summary",
                            "mode": "reference",
                            "output": "web_summary",
                            "sweep": false,
                            "sweepRootId": "web_summary",
                            "node": "SUMMARIZE_REPORTS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SUMMARIZE_REPORTS/fork0/chnk0-u5c5a7429fb/files/web_summary.html",
                            "waiting": false
                        },
                        {
                            "id": "raw_feature_bc_matrix_h5",
                            "type": "h5",
                            "valexp": "SC_RNA_COUNTER.raw_gene_bc_matrices_h5",
                            "mode": "reference",
                            "output": "matrices_h5",
                            "sweep": false,
                            "sweepRootId": "raw_feature_bc_matrix_h5",
                            "node": "COUNT_GENES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/join-u5c5a742053/files/matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "analysis",
                            "type": "path",
                            "valexp": "SC_RNA_COUNTER.analysis_csv",
                            "mode": "reference",
                            "output": "analysis_csv",
                            "sweep": false,
                            "sweepRootId": "analysis",
                            "node": "SUMMARIZE_ANALYSIS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "crispr_analysis",
                            "type": "path",
                            "valexp": "SC_RNA_COUNTER.crispr_analysis",
                            "mode": "reference",
                            "output": "crispr_analysis",
                            "sweep": false,
                            "sweepRootId": "crispr_analysis",
                            "node": "SUMMARIZE_CRISPR_ANALYSIS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cloupe",
                            "type": "cloupe",
                            "valexp": "CLOUPE_PREPROCESS.output_for_cloupe",
                            "mode": "reference",
                            "output": "output_for_cloupe",
                            "sweep": false,
                            "sweepRootId": "cloupe",
                            "node": "CLOUPE_PREPROCESS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "CLOUPE_PREPROCESS",
        "fqname": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/CLOUPE_PREPROCESS",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/CLOUPE_PREPROCESS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/CLOUPE_PREPROCESS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/CLOUPE_PREPROCESS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/CLOUPE_PREPROCESS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/CLOUPE_PREPROCESS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "aggregation_csv",
                            "type": "csv",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "aggregation_csv",
                            "node": "CLOUPE_PREPROCESS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "no_secondary_analysis",
                            "type": "bool",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "no_secondary_analysis",
                            "node": "CLOUPE_PREPROCESS",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "sample_id",
                            "type": "string",
                            "valexp": "self.sample_id",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_id",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "10X_G171C_mm9_2000",
                            "waiting": false
                        },
                        {
                            "id": "analysis",
                            "type": "path",
                            "valexp": "SC_RNA_COUNTER.analysis",
                            "mode": "reference",
                            "output": "analysis",
                            "sweep": false,
                            "sweepRootId": "analysis",
                            "node": "SUMMARIZE_ANALYSIS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "filtered_gene_bc_matrices_h5",
                            "type": "h5",
                            "valexp": "SC_RNA_COUNTER.filtered_gene_bc_matrices_h5",
                            "mode": "reference",
                            "output": "filtered_matrices_h5",
                            "sweep": false,
                            "sweepRootId": "filtered_gene_bc_matrices_h5",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-u5c5a742785/files/filtered_matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "metrics_json",
                            "type": "json",
                            "valexp": "SC_RNA_COUNTER.metrics_summary_json",
                            "mode": "reference",
                            "output": "metrics_summary_json",
                            "sweep": false,
                            "sweepRootId": "metrics_json",
                            "node": "SUMMARIZE_REPORTS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SUMMARIZE_REPORTS/fork0/chnk0-u5c5a7429fb/files/metrics_summary_json.json",
                            "waiting": false
                        },
                        {
                            "id": "pipestance_type",
                            "type": "string",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "pipestance_type",
                            "node": "CLOUPE_PREPROCESS",
                            "matchedFork": 0,
                            "value": "SC_RNA_COUNTER_CS",
                            "waiting": false
                        },
                        {
                            "id": "sample_desc",
                            "type": "string",
                            "valexp": "self.sample_desc",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_desc",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "",
                            "waiting": false
                        },
                        {
                            "id": "gem_group_index_json",
                            "type": "json",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "gem_group_index_json",
                            "node": "CLOUPE_PREPROCESS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/cloupe/cloupe_preprocess"
    },
    {
        "name": "EXPAND_SAMPLE_DEF",
        "fqname": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/EXPAND_SAMPLE_DEF",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/EXPAND_SAMPLE_DEF",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/EXPAND_SAMPLE_DEF/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/EXPAND_SAMPLE_DEF/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/EXPAND_SAMPLE_DEF/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/EXPAND_SAMPLE_DEF/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "raw_sample_def",
                            "type": "map",
                            "valexp": "self.sample_def",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_def",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "fastq_mode": "ILMN_BCL2FASTQ",
                                    "gem_group": null,
                                    "lanes": null,
                                    "read_path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/H3LTJBBXX/10X_G171C_MissingLibrary_1_H3LTJBBXX",
                                    "sample_indices": [
                                        "any"
                                    ],
                                    "sample_names": [
                                        "G171C"
                                    ]
                                }
                            ],
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/common/expand_sample_def"
    },
    {
        "name": "SC_RNA_COUNTER",
        "fqname": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER",
        "type": "pipeline",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": null,
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "cell_barcodes",
                            "type": "json",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "cell_barcodes",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "chemistry_name",
                            "type": "string",
                            "valexp": "self.chemistry",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "chemistry",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "auto",
                            "waiting": false
                        },
                        {
                            "id": "library_type_filter",
                            "type": "string",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "library_type_filter",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "barcode_compatibility_cutoff",
                            "type": "float",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "barcode_compatibility_cutoff",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "align_threads",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "align_threads",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": 4,
                            "waiting": false
                        },
                        {
                            "id": "initial_reads",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "initial_reads",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "allowed_chems",
                            "type": "string",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "allowed_chems",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": [
                                "auto",
                                "custom",
                                "threeprime",
                                "fiveprime",
                                "SC3P_auto",
                                "SC5P_auto",
                                "SC3Pv1",
                                "SC3Pv2",
                                "SC3Pv3",
                                "SC5P-PE",
                                "SC5P-R2",
                                "SC5P-R1",
                                "SC-FB"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "valexp": "self.feature_reference",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "feature_reference",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "recovered_cells",
                            "type": "int",
                            "valexp": "self.recovered_cells",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "recovered_cells",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/ref/mm9/mm9_usethis",
                            "waiting": false
                        },
                        {
                            "id": "primers",
                            "type": "map",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "primers",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "name": "P5",
                                    "seq": "AATGATACGGCGACCACCGAGATCT"
                                },
                                {
                                    "name": "P7",
                                    "seq": "CAAGCAGAAGACGGCATACGAGAT"
                                },
                                {
                                    "name": "R1",
                                    "seq": "ACACTCTTTCCCTACACGACG"
                                },
                                {
                                    "name": "R2",
                                    "seq": "GTGACTGGAGTTCAGACGTGTG"
                                },
                                {
                                    "name": "switch_oligo",
                                    "seq": "AAGCAGTGGTATCAACGCAGAGTACATGGG"
                                },
                                {
                                    "name": "polyA",
                                    "seq": "AAAAAAAAAAAAAAAAAAAA"
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "r1_length",
                            "type": "int",
                            "valexp": "self.r1_length",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "r1_length",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "sample_id",
                            "type": "string",
                            "valexp": "self.sample_id",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_id",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "10X_G171C_mm9_2000",
                            "waiting": false
                        },
                        {
                            "id": "custom_chemistry_def",
                            "type": "map",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "custom_chemistry_def",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "force_cells",
                            "type": "int",
                            "valexp": "self.force_cells",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "force_cells",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": 2000,
                            "waiting": false
                        },
                        {
                            "id": "subsample_rate",
                            "type": "float",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "subsample_rate",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": 1,
                            "waiting": false
                        },
                        {
                            "id": "disable_preflight_local",
                            "type": "bool",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "disable_preflight_local",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "sample_def",
                            "type": "map",
                            "valexp": "EXPAND_SAMPLE_DEF.sample_def",
                            "mode": "reference",
                            "output": "sample_def",
                            "sweep": false,
                            "sweepRootId": "sample_def",
                            "node": "EXPAND_SAMPLE_DEF",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "gem_group": null,
                                    "lanes": null,
                                    "sample_names": [
                                        "G171C"
                                    ],
                                    "sample_indices": [
                                        "any"
                                    ],
                                    "fastq_mode": "ILMN_BCL2FASTQ",
                                    "read_path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/H3LTJBBXX/10X_G171C_MissingLibrary_1_H3LTJBBXX"
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "umi_min_qual_threshold",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "umi_min_qual_threshold",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": 10,
                            "waiting": false
                        },
                        {
                            "id": "barcode_confidence_threshold",
                            "type": "float",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "barcode_confidence_threshold",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": 0.975,
                            "waiting": false
                        },
                        {
                            "id": "r2_length",
                            "type": "int",
                            "valexp": "self.r2_length",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "r2_length",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "sample_desc",
                            "type": "string",
                            "valexp": "self.sample_desc",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_desc",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "",
                            "waiting": false
                        },
                        {
                            "id": "annotation_params",
                            "type": "map",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "annotation_params",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "no_secondary_analysis",
                            "type": "bool",
                            "valexp": "self.no_secondary_analysis",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "no_secondary_analysis",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "filter_umis",
                            "type": "bool",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "filter_umis",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "retain_fastqs",
                            "type": "bool",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "retain_fastqs",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "num_reads_to_check_barcode",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_reads_to_check_barcode",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "align",
                            "type": "map",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "align",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": {
                                "aligner": "star",
                                "high_conf_mapq": null
                            },
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "possorted_genome_bam",
                            "type": "bam",
                            "valexp": "_BASIC_SC_RNA_COUNTER.possorted_genome_bam",
                            "mode": "reference",
                            "output": "output",
                            "sweep": false,
                            "sweepRootId": "possorted_genome_bam",
                            "node": "SORT_BY_POS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/join-u5c5a742052/files/output.bam",
                            "waiting": false
                        },
                        {
                            "id": "possorted_genome_bam_index",
                            "type": "bam.bai",
                            "valexp": "_BASIC_SC_RNA_COUNTER.possorted_genome_bam_index",
                            "mode": "reference",
                            "output": "index",
                            "sweep": false,
                            "sweepRootId": "possorted_genome_bam_index",
                            "node": "SORT_BY_POS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/join-u5c5a742052/files/output.bam.bai",
                            "waiting": false
                        },
                        {
                            "id": "web_summary",
                            "type": "html",
                            "valexp": "SUMMARIZE_REPORTS.web_summary",
                            "mode": "reference",
                            "output": "web_summary",
                            "sweep": false,
                            "sweepRootId": "web_summary",
                            "node": "SUMMARIZE_REPORTS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SUMMARIZE_REPORTS/fork0/chnk0-u5c5a7429fb/files/web_summary.html",
                            "waiting": false
                        },
                        {
                            "id": "analysis",
                            "type": "path",
                            "valexp": "SC_RNA_ANALYZER.analysis",
                            "mode": "reference",
                            "output": "analysis",
                            "sweep": false,
                            "sweepRootId": "analysis",
                            "node": "SUMMARIZE_ANALYSIS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "analysis_csv",
                            "type": "path",
                            "valexp": "SC_RNA_ANALYZER.analysis_csv",
                            "mode": "reference",
                            "output": "analysis_csv",
                            "sweep": false,
                            "sweepRootId": "analysis_csv",
                            "node": "SUMMARIZE_ANALYSIS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "barcode_correction_csv",
                            "type": "csv",
                            "valexp": "_BASIC_SC_RNA_COUNTER.barcode_correction_csv",
                            "mode": "reference",
                            "output": "barcode_summary",
                            "sweep": false,
                            "sweepRootId": "barcode_correction_csv",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/join-u5c5a741eaf/files/barcode_summary.csv",
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "valexp": "SUMMARIZE_REPORTS.feature_reference",
                            "mode": "reference",
                            "output": "feature_reference",
                            "sweep": false,
                            "sweepRootId": "feature_reference",
                            "node": "SUMMARIZE_REPORTS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SUMMARIZE_REPORTS/fork0/chnk0-u5c5a7429fb/files/feature_reference.csv",
                            "waiting": false
                        },
                        {
                            "id": "metrics_summary_csv",
                            "type": "csv",
                            "valexp": "SUMMARIZE_REPORTS.metrics_summary_csv",
                            "mode": "reference",
                            "output": "metrics_summary_csv",
                            "sweep": false,
                            "sweepRootId": "metrics_summary_csv",
                            "node": "SUMMARIZE_REPORTS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SUMMARIZE_REPORTS/fork0/chnk0-u5c5a7429fb/files/metrics_summary_csv.csv",
                            "waiting": false
                        },
                        {
                            "id": "raw_gene_bc_matrices_h5",
                            "type": "h5",
                            "valexp": "_BASIC_SC_RNA_COUNTER.raw_gene_bc_matrices_h5",
                            "mode": "reference",
                            "output": "matrices_h5",
                            "sweep": false,
                            "sweepRootId": "raw_gene_bc_matrices_h5",
                            "node": "COUNT_GENES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/join-u5c5a742053/files/matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "raw_gene_bc_matrices_mex",
                            "type": "path",
                            "valexp": "_BASIC_SC_RNA_COUNTER.raw_gene_bc_matrices_mex",
                            "mode": "reference",
                            "output": "matrices_mex",
                            "sweep": false,
                            "sweepRootId": "raw_gene_bc_matrices_mex",
                            "node": "COUNT_GENES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/join-u5c5a742053/files/matrices_mex",
                            "waiting": false
                        },
                        {
                            "id": "filtered_gene_bc_matrices_mex",
                            "type": "path",
                            "valexp": "_BASIC_SC_RNA_COUNTER.filtered_gene_bc_matrices_mex",
                            "mode": "reference",
                            "output": "filtered_matrices_mex",
                            "sweep": false,
                            "sweepRootId": "filtered_gene_bc_matrices_mex",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-u5c5a742785/files/filtered_matrices_mex",
                            "waiting": false
                        },
                        {
                            "id": "crispr_analysis",
                            "type": "path",
                            "valexp": "_CRISPR_ANALYZER.crispr_analysis",
                            "mode": "reference",
                            "output": "crispr_analysis",
                            "sweep": false,
                            "sweepRootId": "crispr_analysis",
                            "node": "SUMMARIZE_CRISPR_ANALYSIS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "chemistry_def",
                            "type": "map",
                            "valexp": "SETUP_CHUNKS.chemistry_def",
                            "mode": "reference",
                            "output": "chemistry_def",
                            "sweep": false,
                            "sweepRootId": "chemistry_def",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "valexp": "CHEMISTRY_DETECTOR.is_antibody_only",
                            "mode": "reference",
                            "output": "is_antibody_only",
                            "sweep": false,
                            "sweepRootId": "is_antibody_only",
                            "node": "DETECT_CHEMISTRY",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "metrics_summary_json",
                            "type": "json",
                            "valexp": "SUMMARIZE_REPORTS.metrics_summary_json",
                            "mode": "reference",
                            "output": "metrics_summary_json",
                            "sweep": false,
                            "sweepRootId": "metrics_summary_json",
                            "node": "SUMMARIZE_REPORTS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SUMMARIZE_REPORTS/fork0/chnk0-u5c5a7429fb/files/metrics_summary_json.json",
                            "waiting": false
                        },
                        {
                            "id": "filtered_gene_bc_matrices_h5",
                            "type": "h5",
                            "valexp": "_BASIC_SC_RNA_COUNTER.filtered_gene_bc_matrices_h5",
                            "mode": "reference",
                            "output": "filtered_matrices_h5",
                            "sweep": false,
                            "sweepRootId": "filtered_gene_bc_matrices_h5",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-u5c5a742785/files/filtered_matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "read_fastqs",
                            "type": "fastq",
                            "valexp": "_BASIC_SC_RNA_COUNTER.read1s",
                            "mode": "reference",
                            "output": "read1s",
                            "sweep": false,
                            "sweepRootId": "read_fastqs",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": [
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk00-u5c5a7401f2/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk01-u5c5a7401f2/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk02-u5c5a7401f2/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk03-u5c5a7401f2/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk04-u5c5a7401f2/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk05-u5c5a7401f2/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk06-u5c5a7401f2/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk07-u5c5a7401f2/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk08-u5c5a7401f2/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk09-u5c5a7401f3/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk10-u5c5a7401f3/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk11-u5c5a7401f3/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk12-u5c5a7401f3/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk13-u5c5a7401f3/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk14-u5c5a7401f3/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk15-u5c5a7401f3/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk16-u5c5a7401f3/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk17-u5c5a7401f3/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk18-u5c5a7401f3/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk19-u5c5a7401f4/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk20-u5c5a7401f4/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk21-u5c5a7401f4/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk22-u5c5a7401f4/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk23-u5c5a7401f4/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk24-u5c5a7401f4/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk25-u5c5a7401f4/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk26-u5c5a7401f4/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk27-u5c5a7401f4/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk28-u5c5a7401f6/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk29-u5c5a7401f6/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk30-u5c5a7401f6/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk31-u5c5a7401f6/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk32-u5c5a7401f6/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk33-u5c5a7401f6/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk34-u5c5a7401f6/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk35-u5c5a7401f6/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk36-u5c5a7401f6/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk37-u5c5a7401f6/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk38-u5c5a7401f6/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk39-u5c5a7401f6/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk40-u5c5a7401f6/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk41-u5c5a7401f6/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk42-u5c5a7401f6/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk43-u5c5a7401f6/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk44-u5c5a7401f6/files/read1s.fastq"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "gem_groups",
                            "type": "int",
                            "valexp": "_BASIC_SC_RNA_COUNTER.gem_groups",
                            "mode": "reference",
                            "output": "gem_groups",
                            "sweep": false,
                            "sweepRootId": "gem_groups",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": [
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1
                            ],
                            "waiting": false
                        },
                        {
                            "id": "chemistry_type",
                            "type": "string",
                            "valexp": "CHEMISTRY_DETECTOR.chemistry_type",
                            "mode": "reference",
                            "output": "chemistry_type",
                            "sweep": false,
                            "sweepRootId": "chemistry_type",
                            "node": "DETECT_CHEMISTRY",
                            "matchedFork": 0,
                            "value": "SC3Pv3",
                            "waiting": false
                        },
                        {
                            "id": "library_info",
                            "type": "map",
                            "valexp": "SETUP_CHUNKS.library_info",
                            "mode": "reference",
                            "output": "library_info",
                            "sweep": false,
                            "sweepRootId": "library_info",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "gem_group": 1,
                                    "library_id": "0",
                                    "library_type": "Gene Expression"
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "barcode_summary",
                            "type": "h5",
                            "valexp": "_BASIC_SC_RNA_COUNTER.barcode_summary",
                            "mode": "reference",
                            "output": "barcode_summary",
                            "sweep": false,
                            "sweepRootId": "barcode_summary",
                            "node": "COUNT_GENES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/join-u5c5a742053/files/barcode_summary.h5",
                            "waiting": false
                        },
                        {
                            "id": "molecule_info",
                            "type": "h5",
                            "valexp": "_BASIC_SC_RNA_COUNTER.molecule_info",
                            "mode": "reference",
                            "output": "output",
                            "sweep": false,
                            "sweepRootId": "molecule_info",
                            "node": "REPORT_MOLECULES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/join-u5c5a7427d0/files/output.h5",
                            "waiting": false
                        },
                        {
                            "id": "barcode_whitelist",
                            "type": "string",
                            "valexp": "SETUP_CHUNKS.barcode_whitelist",
                            "mode": "reference",
                            "output": "barcode_whitelist",
                            "sweep": false,
                            "sweepRootId": "barcode_whitelist",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": "3M-february-2018",
                            "waiting": false
                        },
                        {
                            "id": "fastq_chunks",
                            "type": "map",
                            "valexp": "SETUP_CHUNKS.chunks",
                            "mode": "reference",
                            "output": "chunks",
                            "sweep": false,
                            "sweepRootId": "fastq_chunks",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/H3LTJBBXX/10X_G171C_MissingLibrary_1_H3LTJBBXX/G171C_S2_L007_I1_001.fastq.gz",
                                        "I2": null,
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/H3LTJBBXX/10X_G171C_MissingLibrary_1_H3LTJBBXX/G171C_S2_L007_R1_001.fastq.gz",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/H3LTJBBXX/10X_G171C_MissingLibrary_1_H3LTJBBXX/G171C_S2_L007_R2_001.fastq.gz"
                                    },
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "reads_interleaved": false
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "align",
                            "type": "map",
                            "valexp": "_BASIC_SC_RNA_COUNTER.align",
                            "mode": "reference",
                            "output": "align",
                            "sweep": false,
                            "sweepRootId": "align",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": {
                                "aligner": "star",
                                "high_conf_mapq": 255
                            },
                            "waiting": false
                        },
                        {
                            "id": "filtered_barcodes",
                            "type": "csv",
                            "valexp": "_BASIC_SC_RNA_COUNTER.filtered_barcodes",
                            "mode": "reference",
                            "output": "filtered_barcodes",
                            "sweep": false,
                            "sweepRootId": "filtered_barcodes",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-u5c5a742785/files/filtered_barcodes.csv",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "CELLRANGER_PREFLIGHT",
        "fqname": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CELLRANGER_PREFLIGHT",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CELLRANGER_PREFLIGHT",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CELLRANGER_PREFLIGHT",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 2,
                    "__vmem_gb": 5
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CELLRANGER_PREFLIGHT/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CELLRANGER_PREFLIGHT/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CELLRANGER_PREFLIGHT/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CELLRANGER_PREFLIGHT/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "sample_def",
                            "type": "map",
                            "valexp": "self.sample_def",
                            "mode": "reference",
                            "output": "sample_def",
                            "sweep": false,
                            "sweepRootId": "sample_def",
                            "node": "EXPAND_SAMPLE_DEF",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "gem_group": null,
                                    "lanes": null,
                                    "sample_names": [
                                        "G171C"
                                    ],
                                    "sample_indices": [
                                        "any"
                                    ],
                                    "fastq_mode": "ILMN_BCL2FASTQ",
                                    "read_path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/H3LTJBBXX/10X_G171C_MissingLibrary_1_H3LTJBBXX"
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "r2_length",
                            "type": "int",
                            "valexp": "self.r2_length",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "r2_length",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "force_cells",
                            "type": "int",
                            "valexp": "self.force_cells",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "force_cells",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": 2000,
                            "waiting": false
                        },
                        {
                            "id": "allowed_chems",
                            "type": "string",
                            "valexp": "self.allowed_chems",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "allowed_chems",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": [
                                "auto",
                                "custom",
                                "threeprime",
                                "fiveprime",
                                "SC3P_auto",
                                "SC5P_auto",
                                "SC3Pv1",
                                "SC3Pv2",
                                "SC3Pv3",
                                "SC5P-PE",
                                "SC5P-R2",
                                "SC5P-R1",
                                "SC-FB"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "chemistry_name",
                            "type": "string",
                            "valexp": "self.chemistry_name",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "chemistry",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "auto",
                            "waiting": false
                        },
                        {
                            "id": "custom_chemistry_def",
                            "type": "map",
                            "valexp": "self.custom_chemistry_def",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "custom_chemistry_def",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/ref/mm9/mm9_usethis",
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "valexp": "self.feature_reference",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "feature_reference",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "check_executables",
                            "type": "bool",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "check_executables",
                            "node": "CELLRANGER_PREFLIGHT",
                            "matchedFork": 0,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "recovered_cells",
                            "type": "int",
                            "valexp": "self.recovered_cells",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "recovered_cells",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "r1_length",
                            "type": "int",
                            "valexp": "self.r1_length",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "r1_length",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CELLRANGER_PREFLIGHT"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/common/cellranger_preflight"
    },
    {
        "name": "CELLRANGER_PREFLIGHT_LOCAL",
        "fqname": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CELLRANGER_PREFLIGHT_LOCAL",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CELLRANGER_PREFLIGHT_LOCAL",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CELLRANGER_PREFLIGHT_LOCAL",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 2,
                    "__vmem_gb": 5
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CELLRANGER_PREFLIGHT_LOCAL/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CELLRANGER_PREFLIGHT_LOCAL/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CELLRANGER_PREFLIGHT_LOCAL/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CELLRANGER_PREFLIGHT_LOCAL/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "recovered_cells",
                            "type": "int",
                            "valexp": "self.recovered_cells",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "recovered_cells",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "force_cells",
                            "type": "int",
                            "valexp": "self.force_cells",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "force_cells",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": 2000,
                            "waiting": false
                        },
                        {
                            "id": "allowed_chems",
                            "type": "string",
                            "valexp": "self.allowed_chems",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "allowed_chems",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": [
                                "auto",
                                "custom",
                                "threeprime",
                                "fiveprime",
                                "SC3P_auto",
                                "SC5P_auto",
                                "SC3Pv1",
                                "SC3Pv2",
                                "SC3Pv3",
                                "SC5P-PE",
                                "SC5P-R2",
                                "SC5P-R1",
                                "SC-FB"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "sample_def",
                            "type": "map",
                            "valexp": "self.sample_def",
                            "mode": "reference",
                            "output": "sample_def",
                            "sweep": false,
                            "sweepRootId": "sample_def",
                            "node": "EXPAND_SAMPLE_DEF",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "gem_group": null,
                                    "lanes": null,
                                    "sample_names": [
                                        "G171C"
                                    ],
                                    "sample_indices": [
                                        "any"
                                    ],
                                    "fastq_mode": "ILMN_BCL2FASTQ",
                                    "read_path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/H3LTJBBXX/10X_G171C_MissingLibrary_1_H3LTJBBXX"
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "custom_chemistry_def",
                            "type": "map",
                            "valexp": "self.custom_chemistry_def",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "custom_chemistry_def",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "check_executables",
                            "type": "bool",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "check_executables",
                            "node": "CELLRANGER_PREFLIGHT_LOCAL",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "r1_length",
                            "type": "int",
                            "valexp": "self.r1_length",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "r1_length",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "r2_length",
                            "type": "int",
                            "valexp": "self.r2_length",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "r2_length",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "chemistry_name",
                            "type": "string",
                            "valexp": "self.chemistry_name",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "chemistry",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "auto",
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/ref/mm9/mm9_usethis",
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "valexp": "self.feature_reference",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "feature_reference",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CELLRANGER_PREFLIGHT_LOCAL"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/common/cellranger_preflight"
    },
    {
        "name": "CHECK_BARCODES_COMPATIBILITY",
        "fqname": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CHECK_BARCODES_COMPATIBILITY",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CHECK_BARCODES_COMPATIBILITY",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 2,
                    "__vmem_gb": 5
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CHECK_BARCODES_COMPATIBILITY/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CHECK_BARCODES_COMPATIBILITY/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CHECK_BARCODES_COMPATIBILITY/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "chunks",
                            "type": "map",
                            "valexp": "SETUP_CHUNKS.chunks",
                            "mode": "reference",
                            "output": "chunks",
                            "sweep": false,
                            "sweepRootId": "chunks",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/H3LTJBBXX/10X_G171C_MissingLibrary_1_H3LTJBBXX/G171C_S2_L007_I1_001.fastq.gz",
                                        "I2": null,
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/H3LTJBBXX/10X_G171C_MissingLibrary_1_H3LTJBBXX/G171C_S2_L007_R1_001.fastq.gz",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/H3LTJBBXX/10X_G171C_MissingLibrary_1_H3LTJBBXX/G171C_S2_L007_R2_001.fastq.gz"
                                    },
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "reads_interleaved": false
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "barcode_whitelist",
                            "type": "string",
                            "valexp": "SETUP_CHUNKS.barcode_whitelist",
                            "mode": "reference",
                            "output": "barcode_whitelist",
                            "sweep": false,
                            "sweepRootId": "barcode_whitelist",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": "3M-february-2018",
                            "waiting": false
                        },
                        {
                            "id": "num_reads_to_check_barcode",
                            "type": "int",
                            "valexp": "self.num_reads_to_check_barcode",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_reads_to_check_barcode",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "barcode_compatibility_cutoff",
                            "type": "float",
                            "valexp": "self.barcode_compatibility_cutoff",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "barcode_compatibility_cutoff",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/counter/check_barcodes_compatibility"
    },
    {
        "name": "CHEMISTRY_DETECTOR",
        "fqname": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR",
        "type": "pipeline",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CHEMISTRY_DETECTOR",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CHEMISTRY_DETECTOR",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": null,
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CHEMISTRY_DETECTOR/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CHEMISTRY_DETECTOR/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CHEMISTRY_DETECTOR/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "r2_length",
                            "type": "int",
                            "valexp": "self.r2_length",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "r2_length",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "sample_id",
                            "type": "string",
                            "valexp": "self.sample_id",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_id",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "10X_G171C_mm9_2000",
                            "waiting": false
                        },
                        {
                            "id": "sample_def",
                            "type": "map",
                            "valexp": "self.sample_def",
                            "mode": "reference",
                            "output": "sample_def",
                            "sweep": false,
                            "sweepRootId": "sample_def",
                            "node": "EXPAND_SAMPLE_DEF",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "gem_group": null,
                                    "lanes": null,
                                    "sample_names": [
                                        "G171C"
                                    ],
                                    "sample_indices": [
                                        "any"
                                    ],
                                    "fastq_mode": "ILMN_BCL2FASTQ",
                                    "read_path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/H3LTJBBXX/10X_G171C_MissingLibrary_1_H3LTJBBXX"
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/ref/mm9/mm9_usethis",
                            "waiting": false
                        },
                        {
                            "id": "vdj_reference_path",
                            "type": "path",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "vdj_reference_path",
                            "node": "CHEMISTRY_DETECTOR",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "chemistry_name_spec",
                            "type": "string",
                            "valexp": "self.chemistry_name",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "chemistry",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "auto",
                            "waiting": false
                        },
                        {
                            "id": "allowed_chems",
                            "type": "string",
                            "valexp": "self.allowed_chems",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "allowed_chems",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": [
                                "auto",
                                "custom",
                                "threeprime",
                                "fiveprime",
                                "SC3P_auto",
                                "SC5P_auto",
                                "SC3Pv1",
                                "SC3Pv2",
                                "SC3Pv3",
                                "SC5P-PE",
                                "SC5P-R2",
                                "SC5P-R1",
                                "SC-FB"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "r1_length",
                            "type": "int",
                            "valexp": "self.r1_length",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "r1_length",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "summary",
                            "type": "json",
                            "valexp": "DETECT_CHEMISTRY.summary",
                            "mode": "reference",
                            "output": "summary",
                            "sweep": false,
                            "sweepRootId": "summary",
                            "node": "DETECT_CHEMISTRY",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CHEMISTRY_DETECTOR/DETECT_CHEMISTRY/fork0/chnk0-u5c5a73efef/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "chemistry_type",
                            "type": "string",
                            "valexp": "DETECT_CHEMISTRY.chemistry_type",
                            "mode": "reference",
                            "output": "chemistry_type",
                            "sweep": false,
                            "sweepRootId": "chemistry_type",
                            "node": "DETECT_CHEMISTRY",
                            "matchedFork": 0,
                            "value": "SC3Pv3",
                            "waiting": false
                        },
                        {
                            "id": "report",
                            "type": "txt",
                            "valexp": "DETECT_CHEMISTRY.report",
                            "mode": "reference",
                            "output": "report",
                            "sweep": false,
                            "sweepRootId": "report",
                            "node": "DETECT_CHEMISTRY",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CHEMISTRY_DETECTOR/DETECT_CHEMISTRY/fork0/chnk0-u5c5a73efef/files/report.txt",
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "valexp": "DETECT_CHEMISTRY.is_antibody_only",
                            "mode": "reference",
                            "output": "is_antibody_only",
                            "sweep": false,
                            "sweepRootId": "is_antibody_only",
                            "node": "DETECT_CHEMISTRY",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "DETECT_CHEMISTRY",
        "fqname": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CHEMISTRY_DETECTOR/DETECT_CHEMISTRY",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CHEMISTRY_DETECTOR/DETECT_CHEMISTRY",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 8,
                    "__vmem_gb": 11
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CHEMISTRY_DETECTOR/DETECT_CHEMISTRY/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CHEMISTRY_DETECTOR/DETECT_CHEMISTRY/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CHEMISTRY_DETECTOR/DETECT_CHEMISTRY/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/CHEMISTRY_DETECTOR/DETECT_CHEMISTRY/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "progress",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "sample_id",
                            "type": "string",
                            "valexp": "self.sample_id",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_id",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "10X_G171C_mm9_2000",
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/ref/mm9/mm9_usethis",
                            "waiting": false
                        },
                        {
                            "id": "vdj_reference_path",
                            "type": "path",
                            "valexp": "self.vdj_reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "vdj_reference_path",
                            "node": "CHEMISTRY_DETECTOR",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "sample_def",
                            "type": "map",
                            "valexp": "self.sample_def",
                            "mode": "reference",
                            "output": "sample_def",
                            "sweep": false,
                            "sweepRootId": "sample_def",
                            "node": "EXPAND_SAMPLE_DEF",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "gem_group": null,
                                    "lanes": null,
                                    "sample_names": [
                                        "G171C"
                                    ],
                                    "sample_indices": [
                                        "any"
                                    ],
                                    "fastq_mode": "ILMN_BCL2FASTQ",
                                    "read_path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/H3LTJBBXX/10X_G171C_MissingLibrary_1_H3LTJBBXX"
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "chemistry_name_spec",
                            "type": "string",
                            "valexp": "self.chemistry_name_spec",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "chemistry",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "auto",
                            "waiting": false
                        },
                        {
                            "id": "allowed_chems",
                            "type": "string",
                            "valexp": "self.allowed_chems",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "allowed_chems",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": [
                                "auto",
                                "custom",
                                "threeprime",
                                "fiveprime",
                                "SC3P_auto",
                                "SC5P_auto",
                                "SC3Pv1",
                                "SC3Pv2",
                                "SC3Pv3",
                                "SC5P-PE",
                                "SC5P-R2",
                                "SC5P-R1",
                                "SC-FB"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "r1_length",
                            "type": "int",
                            "valexp": "self.r1_length",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "r1_length",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "r2_length",
                            "type": "int",
                            "valexp": "self.r2_length",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "r2_length",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/chemistry_detector/detect_chemistry"
    },
    {
        "name": "DISABLE_FEATURE_STAGES",
        "fqname": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/DISABLE_FEATURE_STAGES",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/DISABLE_FEATURE_STAGES",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/DISABLE_FEATURE_STAGES/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/DISABLE_FEATURE_STAGES/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/DISABLE_FEATURE_STAGES/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/DISABLE_FEATURE_STAGES/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "sample_def",
                            "type": "map",
                            "valexp": "self.sample_def",
                            "mode": "reference",
                            "output": "sample_def",
                            "sweep": false,
                            "sweepRootId": "sample_def",
                            "node": "EXPAND_SAMPLE_DEF",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "gem_group": null,
                                    "lanes": null,
                                    "sample_names": [
                                        "G171C"
                                    ],
                                    "sample_indices": [
                                        "any"
                                    ],
                                    "fastq_mode": "ILMN_BCL2FASTQ",
                                    "read_path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/H3LTJBBXX/10X_G171C_MissingLibrary_1_H3LTJBBXX"
                                }
                            ],
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/common/disable_feature_stages"
    },
    {
        "name": "SC_RNA_ANALYZER",
        "fqname": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER",
        "type": "pipeline",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": null,
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "tsne_max_iter",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_max_iter",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_pca_bcs",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_pca_bcs",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cbc_alpha",
                            "type": "float",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "cbc_alpha",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_perplexity",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_perplexity",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_analysis_bcs",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_analysis_bcs",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cbc_realign_panorama",
                            "type": "bool",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "cbc_realign_panorama",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_input_pcs",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_input_pcs",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "force_cells",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "force_cells",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_principal_comps",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_principal_comps",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "graphclust_neighbors",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "graphclust_neighbors",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "exclude_genes",
                            "type": "csv",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "exclude_genes",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "umap_metric",
                            "type": "string",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "umap_metric",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "filtered_matrices_h5",
                            "type": "h5",
                            "valexp": "_BASIC_SC_RNA_COUNTER.filtered_gene_bc_matrices_h5",
                            "mode": "reference",
                            "output": "filtered_matrices_h5",
                            "sweep": false,
                            "sweepRootId": "filtered_matrices_h5",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-u5c5a742785/files/filtered_matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "use_genes",
                            "type": "csv",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "use_genes",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "max_clusters",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "max_clusters",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "use_bcs",
                            "type": "csv",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "use_bcs",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_max_dims",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_max_dims",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "umap_max_dims",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "umap_max_dims",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "umap_min_dist",
                            "type": "float",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "umap_min_dist",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "raw_matrices_h5",
                            "type": "h5",
                            "valexp": "_BASIC_SC_RNA_COUNTER.raw_gene_bc_matrices_h5",
                            "mode": "reference",
                            "output": "matrices_h5",
                            "sweep": false,
                            "sweepRootId": "raw_matrices_h5",
                            "node": "COUNT_GENES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/join-u5c5a742053/files/matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "cbc_knn",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "cbc_knn",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "neighbor_a",
                            "type": "float",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "neighbor_a",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_mom_switch_iter",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_mom_switch_iter",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "chemistry_batch_correction",
                            "type": "bool",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "chemistry_batch_correction",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "tsne_stop_lying_iter",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_stop_lying_iter",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "aggr_library_info",
                            "type": "map",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "aggr_library_info",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_pca_genes",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_pca_genes",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "neighbor_b",
                            "type": "float",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "neighbor_b",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "random_seed",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "random_seed",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_theta",
                            "type": "float",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_theta",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "umap_n_neighbors",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "umap_n_neighbors",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "umap_input_pcs",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "umap_input_pcs",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "no_secondary_analysis",
                            "type": "bool",
                            "valexp": "self.no_secondary_analysis",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "no_secondary_analysis",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "cbc_sigma",
                            "type": "float",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "cbc_sigma",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "analysis",
                            "type": "path",
                            "valexp": "SUMMARIZE_ANALYSIS.analysis",
                            "mode": "reference",
                            "output": "analysis",
                            "sweep": false,
                            "sweepRootId": "analysis",
                            "node": "SUMMARIZE_ANALYSIS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "analysis_csv",
                            "type": "path",
                            "valexp": "SUMMARIZE_ANALYSIS.analysis_csv",
                            "mode": "reference",
                            "output": "analysis_csv",
                            "sweep": false,
                            "sweepRootId": "analysis_csv",
                            "node": "SUMMARIZE_ANALYSIS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cloupe_matrix_h5",
                            "type": "h5",
                            "valexp": "PREPROCESS_MATRIX.cloupe_matrix_h5",
                            "mode": "reference",
                            "output": "cloupe_matrix_h5",
                            "sweep": false,
                            "sweepRootId": "cloupe_matrix_h5",
                            "node": "PREPROCESS_MATRIX",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "summary",
                            "type": "json",
                            "valexp": "SUMMARIZE_ANALYSIS.summary",
                            "mode": "reference",
                            "output": "summary",
                            "sweep": false,
                            "sweepRootId": "summary",
                            "node": "SUMMARIZE_ANALYSIS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "ANALYZER_PREFLIGHT",
        "fqname": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/ANALYZER_PREFLIGHT",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/ANALYZER_PREFLIGHT",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/ANALYZER_PREFLIGHT/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/ANALYZER_PREFLIGHT/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/ANALYZER_PREFLIGHT/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/ANALYZER_PREFLIGHT/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "raw_matrices_h5",
                            "type": "h5",
                            "valexp": "self.raw_matrices_h5",
                            "mode": "reference",
                            "output": "matrices_h5",
                            "sweep": false,
                            "sweepRootId": "raw_matrices_h5",
                            "node": "COUNT_GENES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/join-u5c5a742053/files/matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "random_seed",
                            "type": "int",
                            "valexp": "self.random_seed",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "random_seed",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_perplexity",
                            "type": "int",
                            "valexp": "self.tsne_perplexity",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_perplexity",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "umap_input_pcs",
                            "type": "int",
                            "valexp": "self.umap_input_pcs",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "umap_input_pcs",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_pca_bcs",
                            "type": "int",
                            "valexp": "self.num_pca_bcs",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_pca_bcs",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cbc_knn",
                            "type": "int",
                            "valexp": "self.cbc_knn",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "cbc_knn",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "graphclust_neighbors",
                            "type": "int",
                            "valexp": "self.graphclust_neighbors",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "graphclust_neighbors",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_theta",
                            "type": "float",
                            "valexp": "self.tsne_theta",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_theta",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_principal_comps",
                            "type": "int",
                            "valexp": "self.num_principal_comps",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_principal_comps",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cbc_alpha",
                            "type": "float",
                            "valexp": "self.cbc_alpha",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "cbc_alpha",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_max_dims",
                            "type": "int",
                            "valexp": "self.tsne_max_dims",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_max_dims",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_stop_lying_iter",
                            "type": "int",
                            "valexp": "self.tsne_stop_lying_iter",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_stop_lying_iter",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "umap_max_dims",
                            "type": "int",
                            "valexp": "self.umap_max_dims",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "umap_max_dims",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "use_bcs",
                            "type": "csv",
                            "valexp": "self.use_bcs",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "use_bcs",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "skip",
                            "type": "bool",
                            "valexp": "self.no_secondary_analysis",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "no_secondary_analysis",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "num_pca_genes",
                            "type": "int",
                            "valexp": "self.num_pca_genes",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_pca_genes",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cbc_sigma",
                            "type": "float",
                            "valexp": "self.cbc_sigma",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "cbc_sigma",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "umap_n_neighbors",
                            "type": "int",
                            "valexp": "self.umap_n_neighbors",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "umap_n_neighbors",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "filtered_matrices_h5",
                            "type": "h5",
                            "valexp": "self.filtered_matrices_h5",
                            "mode": "reference",
                            "output": "filtered_matrices_h5",
                            "sweep": false,
                            "sweepRootId": "filtered_matrices_h5",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-u5c5a742785/files/filtered_matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "use_genes",
                            "type": "csv",
                            "valexp": "self.use_genes",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "use_genes",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_analysis_bcs",
                            "type": "int",
                            "valexp": "self.num_analysis_bcs",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_analysis_bcs",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "neighbor_a",
                            "type": "float",
                            "valexp": "self.neighbor_a",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "neighbor_a",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_max_iter",
                            "type": "int",
                            "valexp": "self.tsne_max_iter",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_max_iter",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_mom_switch_iter",
                            "type": "int",
                            "valexp": "self.tsne_mom_switch_iter",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_mom_switch_iter",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "exclude_genes",
                            "type": "csv",
                            "valexp": "self.exclude_genes",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "exclude_genes",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "force_cells",
                            "type": "int",
                            "valexp": "self.force_cells",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "force_cells",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "neighbor_b",
                            "type": "float",
                            "valexp": "self.neighbor_b",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "neighbor_b",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_input_pcs",
                            "type": "int",
                            "valexp": "self.tsne_input_pcs",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_input_pcs",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "umap_min_dist",
                            "type": "float",
                            "valexp": "self.umap_min_dist",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "umap_min_dist",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "umap_metric",
                            "type": "string",
                            "valexp": "self.umap_metric",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "umap_metric",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cbc_realign_panorama",
                            "type": "bool",
                            "valexp": "self.cbc_realign_panorama",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "cbc_realign_panorama",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "max_clusters",
                            "type": "int",
                            "valexp": "self.max_clusters",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "max_clusters",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/analyzer/analyzer_preflight"
    },
    {
        "name": "CHOOSE_DIMENSION_REDUCTION",
        "fqname": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "chemistry_batch_correction",
                            "type": "bool",
                            "valexp": "self.chemistry_batch_correction",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "chemistry_batch_correction",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/analyzer/choose_dimension_reduction"
    },
    {
        "name": "CHOOSE_DIMENSION_REDUCTION_OUTPUT",
        "fqname": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "pca_h5_list",
                            "type": "h5",
                            "valexp": "",
                            "mode": "array",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "pca_h5_list",
                            "node": "CHOOSE_DIMENSION_REDUCTION_OUTPUT",
                            "matchedFork": 0,
                            "value": [
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_PCA/fork0/join-u5c5a7428c2/files/pca_h5.h5",
                                null
                            ],
                            "waiting": false
                        },
                        {
                            "id": "pca_csv_list",
                            "type": "path",
                            "valexp": "",
                            "mode": "array",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "pca_csv_list",
                            "node": "CHOOSE_DIMENSION_REDUCTION_OUTPUT",
                            "matchedFork": 0,
                            "value": [
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_PCA/fork0/join-u5c5a7428c2/files/pca_csv",
                                null
                            ],
                            "waiting": false
                        },
                        {
                            "id": "skip",
                            "type": "bool",
                            "valexp": "ANALYZER_PREFLIGHT.skip",
                            "mode": "reference",
                            "output": "skip",
                            "sweep": false,
                            "sweepRootId": "skip",
                            "node": "ANALYZER_PREFLIGHT",
                            "matchedFork": 0,
                            "value": true,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/analyzer/choose_dimension_reduction_output"
    },
    {
        "name": "COMBINE_CLUSTERING",
        "fqname": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/COMBINE_CLUSTERING",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/COMBINE_CLUSTERING",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/COMBINE_CLUSTERING/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/COMBINE_CLUSTERING/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/COMBINE_CLUSTERING/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/COMBINE_CLUSTERING/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "skip",
                            "type": "bool",
                            "valexp": "ANALYZER_PREFLIGHT.skip",
                            "mode": "reference",
                            "output": "skip",
                            "sweep": false,
                            "sweepRootId": "skip",
                            "node": "ANALYZER_PREFLIGHT",
                            "matchedFork": 0,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "kmeans_h5",
                            "type": "h5",
                            "valexp": "RUN_KMEANS.kmeans_h5",
                            "mode": "reference",
                            "output": "kmeans_h5",
                            "sweep": false,
                            "sweepRootId": "kmeans_h5",
                            "node": "RUN_KMEANS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_KMEANS/fork0/join-u5c5a7428ea/files/kmeans_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "kmeans_csv",
                            "type": "path",
                            "valexp": "RUN_KMEANS.kmeans_csv",
                            "mode": "reference",
                            "output": "kmeans_csv",
                            "sweep": false,
                            "sweepRootId": "kmeans_csv",
                            "node": "RUN_KMEANS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_KMEANS/fork0/join-u5c5a7428ea/files/kmeans_csv",
                            "waiting": false
                        },
                        {
                            "id": "graphclust_h5",
                            "type": "h5",
                            "valexp": "MERGE_CLUSTERS.clusters_h5",
                            "mode": "reference",
                            "output": "clusters_h5",
                            "sweep": false,
                            "sweepRootId": "graphclust_h5",
                            "node": "MERGE_CLUSTERS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/MERGE_CLUSTERS/fork0/join-u5c5a742905/files/clusters_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "graphclust_csv",
                            "type": "path",
                            "valexp": "MERGE_CLUSTERS.clusters_csv",
                            "mode": "reference",
                            "output": "clusters_csv",
                            "sweep": false,
                            "sweepRootId": "graphclust_csv",
                            "node": "MERGE_CLUSTERS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/MERGE_CLUSTERS/fork0/join-u5c5a742905/files/clusters_csv",
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/analyzer/combine_clustering"
    },
    {
        "name": "CORRECT_CHEMISTRY_BATCH",
        "fqname": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CORRECT_CHEMISTRY_BATCH",
        "state": "disabled",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CORRECT_CHEMISTRY_BATCH",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CORRECT_CHEMISTRY_BATCH/fork0",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CORRECT_CHEMISTRY_BATCH/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CORRECT_CHEMISTRY_BATCH/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "skip",
                            "type": "bool",
                            "valexp": "ANALYZER_PREFLIGHT.skip",
                            "mode": "reference",
                            "output": "skip",
                            "sweep": false,
                            "sweepRootId": "skip",
                            "node": "ANALYZER_PREFLIGHT",
                            "matchedFork": 0,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "dimred_matrix",
                            "type": "pickle",
                            "valexp": "RUN_FBPCA.dimred_matrix",
                            "mode": "reference",
                            "output": "dimred_matrix",
                            "sweep": false,
                            "sweepRootId": "dimred_matrix",
                            "node": "RUN_FBPCA",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "matrix_barcode_feature_info",
                            "type": "pickle",
                            "valexp": "RUN_FBPCA.matrix_barcode_feature_info",
                            "mode": "reference",
                            "output": "matrix_barcode_feature_info",
                            "sweep": false,
                            "sweepRootId": "matrix_barcode_feature_info",
                            "node": "RUN_FBPCA",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "library_info",
                            "type": "map",
                            "valexp": "self.aggr_library_info",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "aggr_library_info",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cbc_knn",
                            "type": "int",
                            "valexp": "self.cbc_knn",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "cbc_knn",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cbc_alpha",
                            "type": "float",
                            "valexp": "self.cbc_alpha",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "cbc_alpha",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cbc_sigma",
                            "type": "float",
                            "valexp": "self.cbc_sigma",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "cbc_sigma",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cbc_realign_panorama",
                            "type": "bool",
                            "valexp": "self.cbc_realign_panorama",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "cbc_realign_panorama",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_FBPCA",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/analyzer/correct_chemistry_batch"
    },
    {
        "name": "MERGE_CLUSTERS",
        "fqname": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/MERGE_CLUSTERS",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/MERGE_CLUSTERS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/MERGE_CLUSTERS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/MERGE_CLUSTERS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/MERGE_CLUSTERS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/MERGE_CLUSTERS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "matrix_h5",
                            "type": "h5",
                            "valexp": "PREPROCESS_MATRIX.preprocessed_matrix_h5",
                            "mode": "reference",
                            "output": "preprocessed_matrix_h5",
                            "sweep": false,
                            "sweepRootId": "matrix_h5",
                            "node": "PREPROCESS_MATRIX",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "pca_h5",
                            "type": "h5",
                            "valexp": "CHOOSE_DIMENSION_REDUCTION_OUTPUT.pca_h5",
                            "mode": "reference",
                            "output": "pca_h5",
                            "sweep": false,
                            "sweepRootId": "pca_h5",
                            "node": "CHOOSE_DIMENSION_REDUCTION_OUTPUT",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT/fork0/chnk0-u5c5a7428e0/files/pca_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "clusters_h5",
                            "type": "h5",
                            "valexp": "RUN_GRAPH_CLUSTERING.clusters_h5",
                            "mode": "reference",
                            "output": "clusters_h5",
                            "sweep": false,
                            "sweepRootId": "clusters_h5",
                            "node": "RUN_GRAPH_CLUSTERING",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_GRAPH_CLUSTERING/fork0/join-u5c5a7428e6/files/clusters_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "skip",
                            "type": "bool",
                            "valexp": "ANALYZER_PREFLIGHT.skip",
                            "mode": "reference",
                            "output": "skip",
                            "sweep": false,
                            "sweepRootId": "skip",
                            "node": "ANALYZER_PREFLIGHT",
                            "matchedFork": 0,
                            "value": true,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/analyzer/merge_clusters"
    },
    {
        "name": "PREPROCESS_MATRIX",
        "fqname": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/PREPROCESS_MATRIX",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/PREPROCESS_MATRIX",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/PREPROCESS_MATRIX/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/PREPROCESS_MATRIX/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/PREPROCESS_MATRIX/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "exclude_genes",
                            "type": "csv",
                            "valexp": "self.exclude_genes",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "exclude_genes",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_bcs",
                            "type": "int",
                            "valexp": "self.num_analysis_bcs",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_analysis_bcs",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "valexp": "ANALYZER_PREFLIGHT.is_antibody_only",
                            "mode": "reference",
                            "output": "is_antibody_only",
                            "sweep": false,
                            "sweepRootId": "is_antibody_only",
                            "node": "ANALYZER_PREFLIGHT",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "matrix_h5",
                            "type": "h5",
                            "valexp": "self.filtered_matrices_h5",
                            "mode": "reference",
                            "output": "filtered_matrices_h5",
                            "sweep": false,
                            "sweepRootId": "filtered_matrices_h5",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-u5c5a742785/files/filtered_matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "random_seed",
                            "type": "int",
                            "valexp": "self.random_seed",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "random_seed",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "use_genes",
                            "type": "csv",
                            "valexp": "self.use_genes",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "use_genes",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "use_bcs",
                            "type": "csv",
                            "valexp": "self.use_bcs",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "use_bcs",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "force_cells",
                            "type": "int",
                            "valexp": "self.force_cells",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "force_cells",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "skip",
                            "type": "bool",
                            "valexp": "ANALYZER_PREFLIGHT.skip",
                            "mode": "reference",
                            "output": "skip",
                            "sweep": false,
                            "sweepRootId": "skip",
                            "node": "ANALYZER_PREFLIGHT",
                            "matchedFork": 0,
                            "value": true,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/analyzer/preprocess_matrix"
    },
    {
        "name": "RUN_DIFFERENTIAL_EXPRESSION",
        "fqname": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_DIFFERENTIAL_EXPRESSION",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_DIFFERENTIAL_EXPRESSION",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_DIFFERENTIAL_EXPRESSION/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_DIFFERENTIAL_EXPRESSION/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_DIFFERENTIAL_EXPRESSION/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_DIFFERENTIAL_EXPRESSION/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "matrix_h5",
                            "type": "h5",
                            "valexp": "PREPROCESS_MATRIX.preprocessed_matrix_h5",
                            "mode": "reference",
                            "output": "preprocessed_matrix_h5",
                            "sweep": false,
                            "sweepRootId": "matrix_h5",
                            "node": "PREPROCESS_MATRIX",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "clustering_h5",
                            "type": "h5",
                            "valexp": "COMBINE_CLUSTERING.clustering_h5",
                            "mode": "reference",
                            "output": "clustering_h5",
                            "sweep": false,
                            "sweepRootId": "clustering_h5",
                            "node": "COMBINE_CLUSTERING",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/COMBINE_CLUSTERING/fork0/chnk0-u5c5a742918/files/clustering_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "random_seed",
                            "type": "int",
                            "valexp": "self.random_seed",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "random_seed",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "max_clusters",
                            "type": "int",
                            "valexp": "self.max_clusters",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "max_clusters",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "valexp": "ANALYZER_PREFLIGHT.is_antibody_only",
                            "mode": "reference",
                            "output": "is_antibody_only",
                            "sweep": false,
                            "sweepRootId": "is_antibody_only",
                            "node": "ANALYZER_PREFLIGHT",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "skip",
                            "type": "bool",
                            "valexp": "ANALYZER_PREFLIGHT.skip",
                            "mode": "reference",
                            "output": "skip",
                            "sweep": false,
                            "sweepRootId": "skip",
                            "node": "ANALYZER_PREFLIGHT",
                            "matchedFork": 0,
                            "value": true,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/analyzer/run_differential_expression"
    },
    {
        "name": "RUN_FBPCA",
        "fqname": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_FBPCA",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_FBPCA",
        "state": "disabled",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_FBPCA",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_FBPCA/fork0",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_FBPCA/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_FBPCA/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "library_info",
                            "type": "map",
                            "valexp": "self.aggr_library_info",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "aggr_library_info",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_pcs",
                            "type": "int",
                            "valexp": "self.num_principal_comps",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_principal_comps",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "skip",
                            "type": "bool",
                            "valexp": "ANALYZER_PREFLIGHT.skip",
                            "mode": "reference",
                            "output": "skip",
                            "sweep": false,
                            "sweepRootId": "skip",
                            "node": "ANALYZER_PREFLIGHT",
                            "matchedFork": 0,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "valexp": "ANALYZER_PREFLIGHT.is_antibody_only",
                            "mode": "reference",
                            "output": "is_antibody_only",
                            "sweep": false,
                            "sweepRootId": "is_antibody_only",
                            "node": "ANALYZER_PREFLIGHT",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "matrix_h5",
                            "type": "h5",
                            "valexp": "PREPROCESS_MATRIX.preprocessed_matrix_h5",
                            "mode": "reference",
                            "output": "preprocessed_matrix_h5",
                            "sweep": false,
                            "sweepRootId": "matrix_h5",
                            "node": "PREPROCESS_MATRIX",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_FBPCA"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_FBPCA"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_FBPCA"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/analyzer/run_fbpca"
    },
    {
        "name": "RUN_GRAPH_CLUSTERING",
        "fqname": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_GRAPH_CLUSTERING",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_GRAPH_CLUSTERING",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_GRAPH_CLUSTERING/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_GRAPH_CLUSTERING/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_GRAPH_CLUSTERING/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_GRAPH_CLUSTERING/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "num_neighbors",
                            "type": "int",
                            "valexp": "self.graphclust_neighbors",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "graphclust_neighbors",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "input_pcs",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "input_pcs",
                            "node": "RUN_GRAPH_CLUSTERING",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "balltree_leaf_size",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "balltree_leaf_size",
                            "node": "RUN_GRAPH_CLUSTERING",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_bcs",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_bcs",
                            "node": "RUN_GRAPH_CLUSTERING",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "similarity_type",
                            "type": "string",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "similarity_type",
                            "node": "RUN_GRAPH_CLUSTERING",
                            "matchedFork": 0,
                            "value": "nn",
                            "waiting": false
                        },
                        {
                            "id": "skip",
                            "type": "bool",
                            "valexp": "ANALYZER_PREFLIGHT.skip",
                            "mode": "reference",
                            "output": "skip",
                            "sweep": false,
                            "sweepRootId": "skip",
                            "node": "ANALYZER_PREFLIGHT",
                            "matchedFork": 0,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "matrix_h5",
                            "type": "h5",
                            "valexp": "PREPROCESS_MATRIX.preprocessed_matrix_h5",
                            "mode": "reference",
                            "output": "preprocessed_matrix_h5",
                            "sweep": false,
                            "sweepRootId": "matrix_h5",
                            "node": "PREPROCESS_MATRIX",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "pca_h5",
                            "type": "h5",
                            "valexp": "CHOOSE_DIMENSION_REDUCTION_OUTPUT.pca_h5",
                            "mode": "reference",
                            "output": "pca_h5",
                            "sweep": false,
                            "sweepRootId": "pca_h5",
                            "node": "CHOOSE_DIMENSION_REDUCTION_OUTPUT",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT/fork0/chnk0-u5c5a7428e0/files/pca_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "neighbor_a",
                            "type": "float",
                            "valexp": "self.neighbor_a",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "neighbor_a",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "neighbor_b",
                            "type": "float",
                            "valexp": "self.neighbor_b",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "neighbor_b",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/analyzer/run_graph_clustering"
    },
    {
        "name": "RUN_KMEANS",
        "fqname": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_KMEANS",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_KMEANS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_KMEANS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_KMEANS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_KMEANS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_KMEANS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "matrix_h5",
                            "type": "h5",
                            "valexp": "PREPROCESS_MATRIX.preprocessed_matrix_h5",
                            "mode": "reference",
                            "output": "preprocessed_matrix_h5",
                            "sweep": false,
                            "sweepRootId": "matrix_h5",
                            "node": "PREPROCESS_MATRIX",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "pca_h5",
                            "type": "h5",
                            "valexp": "CHOOSE_DIMENSION_REDUCTION_OUTPUT.pca_h5",
                            "mode": "reference",
                            "output": "pca_h5",
                            "sweep": false,
                            "sweepRootId": "pca_h5",
                            "node": "CHOOSE_DIMENSION_REDUCTION_OUTPUT",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT/fork0/chnk0-u5c5a7428e0/files/pca_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "random_seed",
                            "type": "int",
                            "valexp": "self.random_seed",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "random_seed",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "max_clusters",
                            "type": "int",
                            "valexp": "self.max_clusters",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "max_clusters",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "skip",
                            "type": "bool",
                            "valexp": "ANALYZER_PREFLIGHT.skip",
                            "mode": "reference",
                            "output": "skip",
                            "sweep": false,
                            "sweepRootId": "skip",
                            "node": "ANALYZER_PREFLIGHT",
                            "matchedFork": 0,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "num_bcs",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_bcs",
                            "node": "RUN_KMEANS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_pcs",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_pcs",
                            "node": "RUN_KMEANS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/analyzer/run_kmeans"
    },
    {
        "name": "RUN_MULTIGENOME_ANALYSIS",
        "fqname": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_MULTIGENOME_ANALYSIS",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_MULTIGENOME_ANALYSIS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_MULTIGENOME_ANALYSIS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_MULTIGENOME_ANALYSIS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_MULTIGENOME_ANALYSIS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "raw_matrices_h5",
                            "type": "h5",
                            "valexp": "self.raw_matrices_h5",
                            "mode": "reference",
                            "output": "matrices_h5",
                            "sweep": false,
                            "sweepRootId": "raw_matrices_h5",
                            "node": "COUNT_GENES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/join-u5c5a742053/files/matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "filtered_matrices_h5",
                            "type": "h5",
                            "valexp": "self.filtered_matrices_h5",
                            "mode": "reference",
                            "output": "filtered_matrices_h5",
                            "sweep": false,
                            "sweepRootId": "filtered_matrices_h5",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-u5c5a742785/files/filtered_matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "is_multi_genome",
                            "type": "bool",
                            "valexp": "PREPROCESS_MATRIX.is_multi_genome",
                            "mode": "reference",
                            "output": "is_multi_genome",
                            "sweep": false,
                            "sweepRootId": "is_multi_genome",
                            "node": "PREPROCESS_MATRIX",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "skip",
                            "type": "bool",
                            "valexp": "ANALYZER_PREFLIGHT.skip",
                            "mode": "reference",
                            "output": "skip",
                            "sweep": false,
                            "sweepRootId": "skip",
                            "node": "ANALYZER_PREFLIGHT",
                            "matchedFork": 0,
                            "value": true,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/analyzer/run_multigenome_analysis"
    },
    {
        "name": "RUN_PCA",
        "fqname": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_PCA",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_PCA",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_PCA/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_PCA/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_PCA/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_PCA/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "num_pcs",
                            "type": "int",
                            "valexp": "self.num_principal_comps",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_principal_comps",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "valexp": "ANALYZER_PREFLIGHT.is_antibody_only",
                            "mode": "reference",
                            "output": "is_antibody_only",
                            "sweep": false,
                            "sweepRootId": "is_antibody_only",
                            "node": "ANALYZER_PREFLIGHT",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "skip",
                            "type": "bool",
                            "valexp": "ANALYZER_PREFLIGHT.skip",
                            "mode": "reference",
                            "output": "skip",
                            "sweep": false,
                            "sweepRootId": "skip",
                            "node": "ANALYZER_PREFLIGHT",
                            "matchedFork": 0,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "matrix_h5",
                            "type": "h5",
                            "valexp": "PREPROCESS_MATRIX.preprocessed_matrix_h5",
                            "mode": "reference",
                            "output": "preprocessed_matrix_h5",
                            "sweep": false,
                            "sweepRootId": "matrix_h5",
                            "node": "PREPROCESS_MATRIX",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "random_seed",
                            "type": "int",
                            "valexp": "self.random_seed",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "random_seed",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_bcs",
                            "type": "int",
                            "valexp": "self.num_pca_bcs",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_pca_bcs",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_genes",
                            "type": "int",
                            "valexp": "self.num_pca_genes",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_pca_genes",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/analyzer/run_pca"
    },
    {
        "name": "RUN_TSNE",
        "fqname": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_TSNE",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_TSNE",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_TSNE/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_TSNE/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_TSNE/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_TSNE/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "max_dims",
                            "type": "int",
                            "valexp": "self.tsne_max_dims",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_max_dims",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "max_iter",
                            "type": "int",
                            "valexp": "self.tsne_max_iter",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_max_iter",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "stop_lying_iter",
                            "type": "int",
                            "valexp": "self.tsne_stop_lying_iter",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_stop_lying_iter",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "theta",
                            "type": "float",
                            "valexp": "self.tsne_theta",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_theta",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "matrix_h5",
                            "type": "h5",
                            "valexp": "PREPROCESS_MATRIX.preprocessed_matrix_h5",
                            "mode": "reference",
                            "output": "preprocessed_matrix_h5",
                            "sweep": false,
                            "sweepRootId": "matrix_h5",
                            "node": "PREPROCESS_MATRIX",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "random_seed",
                            "type": "int",
                            "valexp": "self.random_seed",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "random_seed",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "perplexity",
                            "type": "int",
                            "valexp": "self.tsne_perplexity",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_perplexity",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "input_pcs",
                            "type": "int",
                            "valexp": "self.tsne_input_pcs",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_input_pcs",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "skip",
                            "type": "bool",
                            "valexp": "ANALYZER_PREFLIGHT.skip",
                            "mode": "reference",
                            "output": "skip",
                            "sweep": false,
                            "sweepRootId": "skip",
                            "node": "ANALYZER_PREFLIGHT",
                            "matchedFork": 0,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "pca_h5",
                            "type": "h5",
                            "valexp": "CHOOSE_DIMENSION_REDUCTION_OUTPUT.pca_h5",
                            "mode": "reference",
                            "output": "pca_h5",
                            "sweep": false,
                            "sweepRootId": "pca_h5",
                            "node": "CHOOSE_DIMENSION_REDUCTION_OUTPUT",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT/fork0/chnk0-u5c5a7428e0/files/pca_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "mom_switch_iter",
                            "type": "int",
                            "valexp": "self.tsne_mom_switch_iter",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "tsne_mom_switch_iter",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "valexp": "ANALYZER_PREFLIGHT.is_antibody_only",
                            "mode": "reference",
                            "output": "is_antibody_only",
                            "sweep": false,
                            "sweepRootId": "is_antibody_only",
                            "node": "ANALYZER_PREFLIGHT",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/analyzer/run_tsne"
    },
    {
        "name": "RUN_UMAP",
        "fqname": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_UMAP",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_UMAP",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_UMAP/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_UMAP/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_UMAP/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_UMAP/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "n_neighbors",
                            "type": "int",
                            "valexp": "self.umap_n_neighbors",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "umap_n_neighbors",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "input_pcs",
                            "type": "int",
                            "valexp": "self.umap_input_pcs",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "umap_input_pcs",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "max_dims",
                            "type": "int",
                            "valexp": "self.umap_max_dims",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "umap_max_dims",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "min_dist",
                            "type": "float",
                            "valexp": "self.umap_min_dist",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "umap_min_dist",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "metric",
                            "type": "string",
                            "valexp": "self.umap_metric",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "umap_metric",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "pca_h5",
                            "type": "h5",
                            "valexp": "CHOOSE_DIMENSION_REDUCTION_OUTPUT.pca_h5",
                            "mode": "reference",
                            "output": "pca_h5",
                            "sweep": false,
                            "sweepRootId": "pca_h5",
                            "node": "CHOOSE_DIMENSION_REDUCTION_OUTPUT",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT/fork0/chnk0-u5c5a7428e0/files/pca_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "random_seed",
                            "type": "int",
                            "valexp": "self.random_seed",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "random_seed",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "skip",
                            "type": "bool",
                            "valexp": "ANALYZER_PREFLIGHT.skip",
                            "mode": "reference",
                            "output": "skip",
                            "sweep": false,
                            "sweepRootId": "skip",
                            "node": "ANALYZER_PREFLIGHT",
                            "matchedFork": 0,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "matrix_h5",
                            "type": "h5",
                            "valexp": "PREPROCESS_MATRIX.preprocessed_matrix_h5",
                            "mode": "reference",
                            "output": "preprocessed_matrix_h5",
                            "sweep": false,
                            "sweepRootId": "matrix_h5",
                            "node": "PREPROCESS_MATRIX",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "valexp": "ANALYZER_PREFLIGHT.is_antibody_only",
                            "mode": "reference",
                            "output": "is_antibody_only",
                            "sweep": false,
                            "sweepRootId": "is_antibody_only",
                            "node": "ANALYZER_PREFLIGHT",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/analyzer/run_umap"
    },
    {
        "name": "SUMMARIZE_ANALYSIS",
        "fqname": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "multi_genome_json",
                            "type": "path",
                            "valexp": "RUN_MULTIGENOME_ANALYSIS.multi_genome_json",
                            "mode": "reference",
                            "output": "multi_genome_json",
                            "sweep": false,
                            "sweepRootId": "multi_genome_json",
                            "node": "RUN_MULTIGENOME_ANALYSIS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_MULTIGENOME_ANALYSIS/fork0/join-u5c5a7428c1/files/multi_genome_json",
                            "waiting": false
                        },
                        {
                            "id": "clustering_h5",
                            "type": "h5",
                            "valexp": "COMBINE_CLUSTERING.clustering_h5",
                            "mode": "reference",
                            "output": "clustering_h5",
                            "sweep": false,
                            "sweepRootId": "clustering_h5",
                            "node": "COMBINE_CLUSTERING",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/COMBINE_CLUSTERING/fork0/chnk0-u5c5a742918/files/clustering_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "pca_csv",
                            "type": "path",
                            "valexp": "CHOOSE_DIMENSION_REDUCTION_OUTPUT.pca_csv",
                            "mode": "reference",
                            "output": "pca_csv",
                            "sweep": false,
                            "sweepRootId": "pca_csv",
                            "node": "CHOOSE_DIMENSION_REDUCTION_OUTPUT",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT/fork0/chnk0-u5c5a7428e0/files/pca_csv",
                            "waiting": false
                        },
                        {
                            "id": "umap_csv",
                            "type": "path",
                            "valexp": "RUN_UMAP.umap_csv",
                            "mode": "reference",
                            "output": "umap_csv",
                            "sweep": false,
                            "sweepRootId": "umap_csv",
                            "node": "RUN_UMAP",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_UMAP/fork0/join-u5c5a7428e7/files/umap_csv",
                            "waiting": false
                        },
                        {
                            "id": "multi_genome_summary",
                            "type": "json",
                            "valexp": "RUN_MULTIGENOME_ANALYSIS.multi_genome_summary",
                            "mode": "reference",
                            "output": "multi_genome_summary",
                            "sweep": false,
                            "sweepRootId": "multi_genome_summary",
                            "node": "RUN_MULTIGENOME_ANALYSIS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_MULTIGENOME_ANALYSIS/fork0/join-u5c5a7428c1/files/multi_genome_summary.json",
                            "waiting": false
                        },
                        {
                            "id": "multi_genome_csv",
                            "type": "path",
                            "valexp": "RUN_MULTIGENOME_ANALYSIS.multi_genome_csv",
                            "mode": "reference",
                            "output": "multi_genome_csv",
                            "sweep": false,
                            "sweepRootId": "multi_genome_csv",
                            "node": "RUN_MULTIGENOME_ANALYSIS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_MULTIGENOME_ANALYSIS/fork0/join-u5c5a7428c1/files/multi_genome_csv",
                            "waiting": false
                        },
                        {
                            "id": "skip",
                            "type": "bool",
                            "valexp": "ANALYZER_PREFLIGHT.skip",
                            "mode": "reference",
                            "output": "skip",
                            "sweep": false,
                            "sweepRootId": "skip",
                            "node": "ANALYZER_PREFLIGHT",
                            "matchedFork": 0,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "umap_h5",
                            "type": "h5",
                            "valexp": "RUN_UMAP.umap_h5",
                            "mode": "reference",
                            "output": "umap_h5",
                            "sweep": false,
                            "sweepRootId": "umap_h5",
                            "node": "RUN_UMAP",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_UMAP/fork0/join-u5c5a7428e7/files/umap_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "tsne_csv",
                            "type": "path",
                            "valexp": "RUN_TSNE.tsne_csv",
                            "mode": "reference",
                            "output": "tsne_csv",
                            "sweep": false,
                            "sweepRootId": "tsne_csv",
                            "node": "RUN_TSNE",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_TSNE/fork0/join-u5c5a7428e9/files/tsne_csv",
                            "waiting": false
                        },
                        {
                            "id": "tsne_h5",
                            "type": "h5",
                            "valexp": "RUN_TSNE.tsne_h5",
                            "mode": "reference",
                            "output": "tsne_h5",
                            "sweep": false,
                            "sweepRootId": "tsne_h5",
                            "node": "RUN_TSNE",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_TSNE/fork0/join-u5c5a7428e9/files/tsne_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "clustering_csv",
                            "type": "path",
                            "valexp": "COMBINE_CLUSTERING.clustering_csv",
                            "mode": "reference",
                            "output": "clustering_csv",
                            "sweep": false,
                            "sweepRootId": "clustering_csv",
                            "node": "COMBINE_CLUSTERING",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/COMBINE_CLUSTERING/fork0/chnk0-u5c5a742918/files/clustering_csv",
                            "waiting": false
                        },
                        {
                            "id": "diffexp_csv",
                            "type": "path",
                            "valexp": "RUN_DIFFERENTIAL_EXPRESSION.diffexp_csv",
                            "mode": "reference",
                            "output": "diffexp_csv",
                            "sweep": false,
                            "sweepRootId": "diffexp_csv",
                            "node": "RUN_DIFFERENTIAL_EXPRESSION",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_DIFFERENTIAL_EXPRESSION/fork0/join-u5c5a74291e/files/diffexp_csv",
                            "waiting": false
                        },
                        {
                            "id": "chemistry_batch_correction",
                            "type": "bool",
                            "valexp": "self.chemistry_batch_correction",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "chemistry_batch_correction",
                            "node": "SC_RNA_ANALYZER",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "pca_h5",
                            "type": "h5",
                            "valexp": "CHOOSE_DIMENSION_REDUCTION_OUTPUT.pca_h5",
                            "mode": "reference",
                            "output": "pca_h5",
                            "sweep": false,
                            "sweepRootId": "pca_h5",
                            "node": "CHOOSE_DIMENSION_REDUCTION_OUTPUT",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT/fork0/chnk0-u5c5a7428e0/files/pca_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "diffexp_h5",
                            "type": "h5",
                            "valexp": "RUN_DIFFERENTIAL_EXPRESSION.diffexp_h5",
                            "mode": "reference",
                            "output": "diffexp_h5",
                            "sweep": false,
                            "sweepRootId": "diffexp_h5",
                            "node": "RUN_DIFFERENTIAL_EXPRESSION",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/RUN_DIFFERENTIAL_EXPRESSION/fork0/join-u5c5a74291e/files/diffexp_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "batch_score_before_correction",
                            "type": "float",
                            "valexp": "CORRECT_CHEMISTRY_BATCH.batch_score_before_correction",
                            "mode": "reference",
                            "output": "batch_score_before_correction",
                            "sweep": false,
                            "sweepRootId": "batch_score_before_correction",
                            "node": "CORRECT_CHEMISTRY_BATCH",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "batch_score_after_correction",
                            "type": "float",
                            "valexp": "CORRECT_CHEMISTRY_BATCH.batch_score_after_correction",
                            "mode": "reference",
                            "output": "batch_score_after_correction",
                            "sweep": false,
                            "sweepRootId": "batch_score_after_correction",
                            "node": "CORRECT_CHEMISTRY_BATCH",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "matrix_h5",
                            "type": "h5",
                            "valexp": "PREPROCESS_MATRIX.preprocessed_matrix_h5",
                            "mode": "reference",
                            "output": "preprocessed_matrix_h5",
                            "sweep": false,
                            "sweepRootId": "matrix_h5",
                            "node": "PREPROCESS_MATRIX",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "is_multi_genome",
                            "type": "bool",
                            "valexp": "PREPROCESS_MATRIX.is_multi_genome",
                            "mode": "reference",
                            "output": "is_multi_genome",
                            "sweep": false,
                            "sweepRootId": "is_multi_genome",
                            "node": "PREPROCESS_MATRIX",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/analyzer/summarize_analysis"
    },
    {
        "name": "SETUP_CHUNKS",
        "fqname": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SETUP_CHUNKS",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SETUP_CHUNKS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SETUP_CHUNKS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SETUP_CHUNKS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SETUP_CHUNKS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SETUP_CHUNKS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "sample_def",
                            "type": "map",
                            "valexp": "self.sample_def",
                            "mode": "reference",
                            "output": "sample_def",
                            "sweep": false,
                            "sweepRootId": "sample_def",
                            "node": "EXPAND_SAMPLE_DEF",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "gem_group": null,
                                    "lanes": null,
                                    "sample_names": [
                                        "G171C"
                                    ],
                                    "sample_indices": [
                                        "any"
                                    ],
                                    "fastq_mode": "ILMN_BCL2FASTQ",
                                    "read_path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/H3LTJBBXX/10X_G171C_MissingLibrary_1_H3LTJBBXX"
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "library_type_filter",
                            "type": "string",
                            "valexp": "self.library_type_filter",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "library_type_filter",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "chemistry_name",
                            "type": "string",
                            "valexp": "CHEMISTRY_DETECTOR.chemistry_type",
                            "mode": "reference",
                            "output": "chemistry_type",
                            "sweep": false,
                            "sweepRootId": "chemistry_name",
                            "node": "DETECT_CHEMISTRY",
                            "matchedFork": 0,
                            "value": "SC3Pv3",
                            "waiting": false
                        },
                        {
                            "id": "custom_chemistry_def",
                            "type": "map",
                            "valexp": "self.custom_chemistry_def",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "custom_chemistry_def",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "default_library_type",
                            "type": "string",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "default_library_type",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "sample_id",
                            "type": "string",
                            "valexp": "self.sample_id",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_id",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "10X_G171C_mm9_2000",
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/common/setup_chunks"
    },
    {
        "name": "SUMMARIZE_REPORTS",
        "fqname": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SUMMARIZE_REPORTS",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SUMMARIZE_REPORTS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 4,
                    "__vmem_gb": 7
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SUMMARIZE_REPORTS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SUMMARIZE_REPORTS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SUMMARIZE_REPORTS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SUMMARIZE_REPORTS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "filtered_gene_bc_matrices_h5",
                            "type": "h5",
                            "valexp": "_BASIC_SC_RNA_COUNTER.filtered_gene_bc_matrices_h5",
                            "mode": "reference",
                            "output": "filtered_matrices_h5",
                            "sweep": false,
                            "sweepRootId": "filtered_gene_bc_matrices_h5",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-u5c5a742785/files/filtered_matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "barcode_whitelist",
                            "type": "string",
                            "valexp": "SETUP_CHUNKS.barcode_whitelist",
                            "mode": "reference",
                            "output": "barcode_whitelist",
                            "sweep": false,
                            "sweepRootId": "barcode_whitelist",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": "3M-february-2018",
                            "waiting": false
                        },
                        {
                            "id": "gem_groups",
                            "type": "int",
                            "valexp": "_BASIC_SC_RNA_COUNTER.gem_groups",
                            "mode": "reference",
                            "output": "gem_groups",
                            "sweep": false,
                            "sweepRootId": "gem_groups",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": [
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1
                            ],
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "valexp": "self.feature_reference",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "feature_reference",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "sample_desc",
                            "type": "string",
                            "valexp": "self.sample_desc",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_desc",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "",
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/ref/mm9/mm9_usethis",
                            "waiting": false
                        },
                        {
                            "id": "analysis",
                            "type": "path",
                            "valexp": "SC_RNA_ANALYZER.analysis",
                            "mode": "reference",
                            "output": "analysis",
                            "sweep": false,
                            "sweepRootId": "analysis",
                            "node": "SUMMARIZE_ANALYSIS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "barcode_summary_h5",
                            "type": "h5",
                            "valexp": "_BASIC_SC_RNA_COUNTER.barcode_summary",
                            "mode": "reference",
                            "output": "barcode_summary",
                            "sweep": false,
                            "sweepRootId": "barcode_summary_h5",
                            "node": "COUNT_GENES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/join-u5c5a742053/files/barcode_summary.h5",
                            "waiting": false
                        },
                        {
                            "id": "summaries",
                            "type": "json",
                            "valexp": "",
                            "mode": "array",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "summaries",
                            "node": "SUMMARIZE_REPORTS",
                            "matchedFork": 0,
                            "value": [
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_BASIC_REPORTS/fork0/join-u5c5a7429eb/files/summary.json",
                                null,
                                null
                            ],
                            "waiting": false
                        },
                        {
                            "id": "sample_id",
                            "type": "string",
                            "valexp": "self.sample_id",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_id",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "10X_G171C_mm9_2000",
                            "waiting": false
                        },
                        {
                            "id": "filtered_barcodes",
                            "type": "csv",
                            "valexp": "_BASIC_SC_RNA_COUNTER.filtered_barcodes",
                            "mode": "reference",
                            "output": "filtered_barcodes",
                            "sweep": false,
                            "sweepRootId": "filtered_barcodes",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-u5c5a742785/files/filtered_barcodes.csv",
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/counter/summarize_reports"
    },
    {
        "name": "_BASIC_SC_RNA_COUNTER",
        "fqname": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER",
        "type": "pipeline",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": null,
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "skip_translate",
                            "type": "map",
                            "valexp": "CHECK_BARCODES_COMPATIBILITY.skip_translate",
                            "mode": "reference",
                            "output": "skip_translate",
                            "sweep": false,
                            "sweepRootId": "skip_translate",
                            "node": "CHECK_BARCODES_COMPATIBILITY",
                            "matchedFork": 0,
                            "value": {},
                            "waiting": false
                        },
                        {
                            "id": "r1_length",
                            "type": "int",
                            "valexp": "self.r1_length",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "r1_length",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "barcode_confidence_threshold",
                            "type": "float",
                            "valexp": "self.barcode_confidence_threshold",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "barcode_confidence_threshold",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": 0.975,
                            "waiting": false
                        },
                        {
                            "id": "library_info",
                            "type": "map",
                            "valexp": "SETUP_CHUNKS.library_info",
                            "mode": "reference",
                            "output": "library_info",
                            "sweep": false,
                            "sweepRootId": "library_info",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "gem_group": 1,
                                    "library_id": "0",
                                    "library_type": "Gene Expression"
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "recovered_cells",
                            "type": "int",
                            "valexp": "self.recovered_cells",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "recovered_cells",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "force_cells",
                            "type": "int",
                            "valexp": "self.force_cells",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "force_cells",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": 2000,
                            "waiting": false
                        },
                        {
                            "id": "rescue_multimappers",
                            "type": "bool",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "rescue_multimappers",
                            "node": "_BASIC_SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/ref/mm9/mm9_usethis",
                            "waiting": false
                        },
                        {
                            "id": "skip_metrics",
                            "type": "bool",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "skip_metrics",
                            "node": "_BASIC_SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "primers",
                            "type": "map",
                            "valexp": "self.primers",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "primers",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "name": "P5",
                                    "seq": "AATGATACGGCGACCACCGAGATCT"
                                },
                                {
                                    "name": "P7",
                                    "seq": "CAAGCAGAAGACGGCATACGAGAT"
                                },
                                {
                                    "name": "R1",
                                    "seq": "ACACTCTTTCCCTACACGACG"
                                },
                                {
                                    "name": "R2",
                                    "seq": "GTGACTGGAGTTCAGACGTGTG"
                                },
                                {
                                    "name": "switch_oligo",
                                    "seq": "AAGCAGTGGTATCAACGCAGAGTACATGGG"
                                },
                                {
                                    "name": "polyA",
                                    "seq": "AAAAAAAAAAAAAAAAAAAA"
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "retain_fastqs",
                            "type": "bool",
                            "valexp": "self.retain_fastqs",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "retain_fastqs",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "initial_reads",
                            "type": "int",
                            "valexp": "self.initial_reads",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "initial_reads",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "valexp": "self.feature_reference",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "feature_reference",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "valexp": "CHEMISTRY_DETECTOR.is_antibody_only",
                            "mode": "reference",
                            "output": "is_antibody_only",
                            "sweep": false,
                            "sweepRootId": "is_antibody_only",
                            "node": "DETECT_CHEMISTRY",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "cell_barcodes",
                            "type": "json",
                            "valexp": "self.cell_barcodes",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "cell_barcodes",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "r2_length",
                            "type": "int",
                            "valexp": "self.r2_length",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "r2_length",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "sample_id",
                            "type": "string",
                            "valexp": "self.sample_id",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_id",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "10X_G171C_mm9_2000",
                            "waiting": false
                        },
                        {
                            "id": "correct_barcodes",
                            "type": "bool",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "correct_barcodes",
                            "node": "_BASIC_SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "umi_min_qual_threshold",
                            "type": "int",
                            "valexp": "self.umi_min_qual_threshold",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "umi_min_qual_threshold",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": 10,
                            "waiting": false
                        },
                        {
                            "id": "chunks",
                            "type": "map",
                            "valexp": "SETUP_CHUNKS.chunks",
                            "mode": "reference",
                            "output": "chunks",
                            "sweep": false,
                            "sweepRootId": "chunks",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/H3LTJBBXX/10X_G171C_MissingLibrary_1_H3LTJBBXX/G171C_S2_L007_I1_001.fastq.gz",
                                        "I2": null,
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/H3LTJBBXX/10X_G171C_MissingLibrary_1_H3LTJBBXX/G171C_S2_L007_R1_001.fastq.gz",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/H3LTJBBXX/10X_G171C_MissingLibrary_1_H3LTJBBXX/G171C_S2_L007_R2_001.fastq.gz"
                                    },
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "reads_interleaved": false
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "subsample_rate",
                            "type": "float",
                            "valexp": "self.subsample_rate",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "subsample_rate",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": 1,
                            "waiting": false
                        },
                        {
                            "id": "chemistry_def",
                            "type": "map",
                            "valexp": "SETUP_CHUNKS.chemistry_def",
                            "mode": "reference",
                            "output": "chemistry_def",
                            "sweep": false,
                            "sweepRootId": "chemistry_def",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "barcode_whitelist",
                            "type": "string",
                            "valexp": "SETUP_CHUNKS.barcode_whitelist",
                            "mode": "reference",
                            "output": "barcode_whitelist",
                            "sweep": false,
                            "sweepRootId": "barcode_whitelist",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": "3M-february-2018",
                            "waiting": false
                        },
                        {
                            "id": "align",
                            "type": "map",
                            "valexp": "self.align",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "align",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": {
                                "aligner": "star",
                                "high_conf_mapq": null
                            },
                            "waiting": false
                        },
                        {
                            "id": "annotation_params",
                            "type": "map",
                            "valexp": "self.annotation_params",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "annotation_params",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "filter_umis",
                            "type": "bool",
                            "valexp": "self.filter_umis",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "filter_umis",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "align_threads",
                            "type": "int",
                            "valexp": "self.align_threads",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "align_threads",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": 4,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "summary",
                            "type": "json",
                            "valexp": "SUMMARIZE_BASIC_REPORTS.summary",
                            "mode": "reference",
                            "output": "summary",
                            "sweep": false,
                            "sweepRootId": "summary",
                            "node": "SUMMARIZE_BASIC_REPORTS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_BASIC_REPORTS/fork0/join-u5c5a7429eb/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "raw_gene_bc_matrices_h5",
                            "type": "h5",
                            "valexp": "COUNT_GENES.matrices_h5",
                            "mode": "reference",
                            "output": "matrices_h5",
                            "sweep": false,
                            "sweepRootId": "raw_gene_bc_matrices_h5",
                            "node": "COUNT_GENES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/join-u5c5a742053/files/matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "filtered_gene_bc_matrices_mex",
                            "type": "path",
                            "valexp": "FILTER_BARCODES.filtered_matrices_mex",
                            "mode": "reference",
                            "output": "filtered_matrices_mex",
                            "sweep": false,
                            "sweepRootId": "filtered_gene_bc_matrices_mex",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-u5c5a742785/files/filtered_matrices_mex",
                            "waiting": false
                        },
                        {
                            "id": "align",
                            "type": "map",
                            "valexp": "SUMMARIZE_READ_REPORTS.align",
                            "mode": "reference",
                            "output": "align",
                            "sweep": false,
                            "sweepRootId": "align",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": {
                                "aligner": "star",
                                "high_conf_mapq": 255
                            },
                            "waiting": false
                        },
                        {
                            "id": "read1s",
                            "type": "fastq",
                            "valexp": "SUMMARIZE_READ_REPORTS.read1s",
                            "mode": "reference",
                            "output": "read1s",
                            "sweep": false,
                            "sweepRootId": "read1s",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": [
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk00-u5c5a7401f2/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk01-u5c5a7401f2/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk02-u5c5a7401f2/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk03-u5c5a7401f2/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk04-u5c5a7401f2/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk05-u5c5a7401f2/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk06-u5c5a7401f2/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk07-u5c5a7401f2/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk08-u5c5a7401f2/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk09-u5c5a7401f3/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk10-u5c5a7401f3/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk11-u5c5a7401f3/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk12-u5c5a7401f3/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk13-u5c5a7401f3/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk14-u5c5a7401f3/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk15-u5c5a7401f3/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk16-u5c5a7401f3/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk17-u5c5a7401f3/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk18-u5c5a7401f3/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk19-u5c5a7401f4/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk20-u5c5a7401f4/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk21-u5c5a7401f4/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk22-u5c5a7401f4/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk23-u5c5a7401f4/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk24-u5c5a7401f4/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk25-u5c5a7401f4/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk26-u5c5a7401f4/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk27-u5c5a7401f4/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk28-u5c5a7401f6/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk29-u5c5a7401f6/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk30-u5c5a7401f6/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk31-u5c5a7401f6/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk32-u5c5a7401f6/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk33-u5c5a7401f6/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk34-u5c5a7401f6/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk35-u5c5a7401f6/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk36-u5c5a7401f6/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk37-u5c5a7401f6/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk38-u5c5a7401f6/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk39-u5c5a7401f6/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk40-u5c5a7401f6/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk41-u5c5a7401f6/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk42-u5c5a7401f6/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk43-u5c5a7401f6/files/read1s.fastq",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk44-u5c5a7401f6/files/read1s.fastq"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "possorted_genome_bam_index",
                            "type": "bam.bai",
                            "valexp": "SORT_BY_POS.index",
                            "mode": "reference",
                            "output": "index",
                            "sweep": false,
                            "sweepRootId": "possorted_genome_bam_index",
                            "node": "SORT_BY_POS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/join-u5c5a742052/files/output.bam.bai",
                            "waiting": false
                        },
                        {
                            "id": "molecule_info",
                            "type": "h5",
                            "valexp": "REPORT_MOLECULES.output",
                            "mode": "reference",
                            "output": "output",
                            "sweep": false,
                            "sweepRootId": "molecule_info",
                            "node": "REPORT_MOLECULES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/join-u5c5a7427d0/files/output.h5",
                            "waiting": false
                        },
                        {
                            "id": "possorted_genome_bam",
                            "type": "bam",
                            "valexp": "SORT_BY_POS.output",
                            "mode": "reference",
                            "output": "output",
                            "sweep": false,
                            "sweepRootId": "possorted_genome_bam",
                            "node": "SORT_BY_POS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/join-u5c5a742052/files/output.bam",
                            "waiting": false
                        },
                        {
                            "id": "raw_gene_bc_matrices_mex",
                            "type": "path",
                            "valexp": "COUNT_GENES.matrices_mex",
                            "mode": "reference",
                            "output": "matrices_mex",
                            "sweep": false,
                            "sweepRootId": "raw_gene_bc_matrices_mex",
                            "node": "COUNT_GENES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/join-u5c5a742053/files/matrices_mex",
                            "waiting": false
                        },
                        {
                            "id": "barcode_correction_csv",
                            "type": "csv",
                            "valexp": "MARK_DUPLICATES.barcode_summary",
                            "mode": "reference",
                            "output": "barcode_summary",
                            "sweep": false,
                            "sweepRootId": "barcode_correction_csv",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/join-u5c5a741eaf/files/barcode_summary.csv",
                            "waiting": false
                        },
                        {
                            "id": "barcode_summary",
                            "type": "h5",
                            "valexp": "COUNT_GENES.barcode_summary",
                            "mode": "reference",
                            "output": "barcode_summary",
                            "sweep": false,
                            "sweepRootId": "barcode_summary",
                            "node": "COUNT_GENES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/join-u5c5a742053/files/barcode_summary.h5",
                            "waiting": false
                        },
                        {
                            "id": "filtered_gene_bc_matrices_h5",
                            "type": "h5",
                            "valexp": "FILTER_BARCODES.filtered_matrices_h5",
                            "mode": "reference",
                            "output": "filtered_matrices_h5",
                            "sweep": false,
                            "sweepRootId": "filtered_gene_bc_matrices_h5",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-u5c5a742785/files/filtered_matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "gem_groups",
                            "type": "int",
                            "valexp": "SUMMARIZE_READ_REPORTS.gem_groups",
                            "mode": "reference",
                            "output": "gem_groups",
                            "sweep": false,
                            "sweepRootId": "gem_groups",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": [
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1
                            ],
                            "waiting": false
                        },
                        {
                            "id": "filtered_barcodes",
                            "type": "csv",
                            "valexp": "FILTER_BARCODES.filtered_barcodes",
                            "mode": "reference",
                            "output": "filtered_barcodes",
                            "sweep": false,
                            "sweepRootId": "filtered_barcodes",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-u5c5a742785/files/filtered_barcodes.csv",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "ALIGN_READS",
        "fqname": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk00-u5c5a73f701/files/reads.fastq/1.fastq.lz4",
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk00",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk01-u5c5a73f701/files/reads.fastq/1.fastq.lz4",
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk01",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk02-u5c5a73f701/files/reads.fastq/1.fastq.lz4",
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk02",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk03-u5c5a73f701/files/reads.fastq/1.fastq.lz4",
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk03",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk04-u5c5a73f701/files/reads.fastq/1.fastq.lz4",
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk04",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk05-u5c5a73f701/files/reads.fastq/1.fastq.lz4",
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk05",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk06-u5c5a73f702/files/reads.fastq/1.fastq.lz4",
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk06",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 7,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk07-u5c5a73f702/files/reads.fastq/1.fastq.lz4",
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk07",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 8,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk08-u5c5a73f702/files/reads.fastq/1.fastq.lz4",
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk08",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 9,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk09-u5c5a73f702/files/reads.fastq/1.fastq.lz4",
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk09",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 10,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk10-u5c5a73f702/files/reads.fastq/1.fastq.lz4",
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk10",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 11,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk11-u5c5a73f702/files/reads.fastq/1.fastq.lz4",
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk11",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 12,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk12-u5c5a73f702/files/reads.fastq/1.fastq.lz4",
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk12",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 13,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk13-u5c5a73f702/files/reads.fastq/1.fastq.lz4",
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk13",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 14,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk14-u5c5a73f702/files/reads.fastq/1.fastq.lz4",
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk14",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 15,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk15-u5c5a73f702/files/reads.fastq/1.fastq.lz4",
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk15",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 16,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk16-u5c5a73f702/files/reads.fastq/1.fastq.lz4",
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk16",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 17,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk17-u5c5a73f702/files/reads.fastq/1.fastq.lz4",
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk17",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 18,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk18-u5c5a73f702/files/reads.fastq/1.fastq.lz4",
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk18",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 19,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk19-u5c5a73f703/files/reads.fastq/1.fastq.lz4",
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk19",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 20,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk20-u5c5a73f703/files/reads.fastq/1.fastq.lz4",
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk20",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 21,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk21-u5c5a73f703/files/reads.fastq/1.fastq.lz4",
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk21",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 22,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk22-u5c5a73f703/files/reads.fastq/1.fastq.lz4",
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk22",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 23,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk23-u5c5a73f703/files/reads.fastq/1.fastq.lz4",
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk23",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 24,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk24-u5c5a73f703/files/reads.fastq/1.fastq.lz4",
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk24",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 25,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk25-u5c5a73f703/files/reads.fastq/1.fastq.lz4",
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk25",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 26,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk26-u5c5a73f703/files/reads.fastq/1.fastq.lz4",
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk26",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 27,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk27-u5c5a73f703/files/reads.fastq/1.fastq.lz4",
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk27",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 28,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk28-u5c5a73f703/files/reads.fastq/1.fastq.lz4",
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk28",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 29,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk29-u5c5a73f703/files/reads.fastq/1.fastq.lz4",
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk29",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 30,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk30-u5c5a73f703/files/reads.fastq/1.fastq.lz4",
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk30",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 31,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk31-u5c5a73f703/files/reads.fastq/1.fastq.lz4",
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk31",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 32,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk32-u5c5a73f704/files/reads.fastq/1.fastq.lz4",
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk32",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 33,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk33-u5c5a73f704/files/reads.fastq/1.fastq.lz4",
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk33",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 34,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk34-u5c5a73f704/files/reads.fastq/1.fastq.lz4",
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk34",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 35,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk35-u5c5a73f704/files/reads.fastq/1.fastq.lz4",
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk35",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 36,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk36-u5c5a73f704/files/reads.fastq/1.fastq.lz4",
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk36",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 37,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk37-u5c5a73f704/files/reads.fastq/1.fastq.lz4",
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk37",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 38,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk38-u5c5a73f704/files/reads.fastq/1.fastq.lz4",
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk38",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 39,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk39-u5c5a73f704/files/reads.fastq/1.fastq.lz4",
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk39",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 40,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk40-u5c5a73f704/files/reads.fastq/1.fastq.lz4",
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk40",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 41,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk41-u5c5a73f704/files/reads.fastq/1.fastq.lz4",
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk41",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 42,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk42-u5c5a73f705/files/reads.fastq/1.fastq.lz4",
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk42",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 43,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk43-u5c5a73f705/files/reads.fastq/1.fastq.lz4",
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk43",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 44,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "library_type": "Gene Expression",
                            "read2_chunk": null,
                            "read_chunk": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk44-u5c5a73f705/files/reads.fastq/1.fastq.lz4",
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk44",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "library_types",
                            "type": "string",
                            "valexp": "SUMMARIZE_READ_REPORTS.library_types",
                            "mode": "reference",
                            "output": "library_types",
                            "sweep": false,
                            "sweepRootId": "library_types",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": [
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/ref/mm9/mm9_usethis",
                            "waiting": false
                        },
                        {
                            "id": "threads",
                            "type": "int",
                            "valexp": "self.align_threads",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "align_threads",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": 4,
                            "waiting": false
                        },
                        {
                            "id": "max_hits_per_read",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "max_hits_per_read",
                            "node": "ALIGN_READS",
                            "matchedFork": 0,
                            "value": -1,
                            "waiting": false
                        },
                        {
                            "id": "reads",
                            "type": "fastq",
                            "valexp": "EXTRACT_READS.reads",
                            "mode": "reference",
                            "output": "reads",
                            "sweep": false,
                            "sweepRootId": "reads",
                            "node": "EXTRACT_READS",
                            "matchedFork": 0,
                            "value": [
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk00-u5c5a73f701/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk01-u5c5a73f701/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk02-u5c5a73f701/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk03-u5c5a73f701/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk04-u5c5a73f701/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk05-u5c5a73f701/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk06-u5c5a73f702/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk07-u5c5a73f702/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk08-u5c5a73f702/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk09-u5c5a73f702/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk10-u5c5a73f702/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk11-u5c5a73f702/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk12-u5c5a73f702/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk13-u5c5a73f702/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk14-u5c5a73f702/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk15-u5c5a73f702/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk16-u5c5a73f702/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk17-u5c5a73f702/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk18-u5c5a73f702/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk19-u5c5a73f703/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk20-u5c5a73f703/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk21-u5c5a73f703/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk22-u5c5a73f703/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk23-u5c5a73f703/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk24-u5c5a73f703/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk25-u5c5a73f703/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk26-u5c5a73f703/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk27-u5c5a73f703/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk28-u5c5a73f703/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk29-u5c5a73f703/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk30-u5c5a73f703/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk31-u5c5a73f703/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk32-u5c5a73f704/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk33-u5c5a73f704/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk34-u5c5a73f704/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk35-u5c5a73f704/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk36-u5c5a73f704/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk37-u5c5a73f704/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk38-u5c5a73f704/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk39-u5c5a73f704/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk40-u5c5a73f704/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk41-u5c5a73f704/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk42-u5c5a73f705/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk43-u5c5a73f705/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk44-u5c5a73f705/files/reads.fastq/1.fastq.lz4"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "read2s",
                            "type": "fastq",
                            "valexp": "EXTRACT_READS.read2s",
                            "mode": "reference",
                            "output": "read2s",
                            "sweep": false,
                            "sweepRootId": "read2s",
                            "node": "EXTRACT_READS",
                            "matchedFork": 0,
                            "value": [],
                            "waiting": false
                        },
                        {
                            "id": "read_groups",
                            "type": "string",
                            "valexp": "SUMMARIZE_READ_REPORTS.read_groups",
                            "mode": "reference",
                            "output": "read_groups",
                            "sweep": false,
                            "sweepRootId": "read_groups",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": [
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7"
                            ],
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/counter/align_reads"
    },
    {
        "name": "ATTACH_BCS_AND_UMIS",
        "fqname": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 12,
                    "__vmem_gb": 15
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk00-u5c5a7402e7/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk00-u5c5a7401f2/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk00",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk01-u5c5a7402e7/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk01-u5c5a7401f2/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk01",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk02-u5c5a7402e7/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk02-u5c5a7401f2/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk02",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk03-u5c5a7402e7/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk03-u5c5a7401f2/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk03",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk04-u5c5a7402e7/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk04-u5c5a7401f2/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk04",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk05-u5c5a7402e7/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk05-u5c5a7401f2/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk05",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk06-u5c5a7402e7/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk06-u5c5a7401f2/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk06",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 7,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk07-u5c5a7402e7/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk07-u5c5a7401f2/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk07",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 8,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk08-u5c5a7402e7/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk08-u5c5a7401f2/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk08",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 9,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk09-u5c5a7402e7/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk09-u5c5a7401f3/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk09",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 10,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk10-u5c5a7402e7/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk10-u5c5a7401f3/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk10",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 11,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk11-u5c5a7402e7/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk11-u5c5a7401f3/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk11",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 12,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk12-u5c5a7402e7/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk12-u5c5a7401f3/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk12",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 13,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk13-u5c5a7402e8/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk13-u5c5a7401f3/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk13",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 14,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk14-u5c5a7402e8/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk14-u5c5a7401f3/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk14",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 15,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk15-u5c5a7402e8/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk15-u5c5a7401f3/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk15",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 16,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk16-u5c5a7402e8/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk16-u5c5a7401f3/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk16",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 17,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk17-u5c5a7402e8/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk17-u5c5a7401f3/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk17",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 18,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk18-u5c5a7402e8/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk18-u5c5a7401f3/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk18",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 19,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk19-u5c5a7402e8/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk19-u5c5a7401f4/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk19",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 20,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk20-u5c5a7402e8/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk20-u5c5a7401f4/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk20",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 21,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk21-u5c5a7402e8/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk21-u5c5a7401f4/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk21",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 22,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk22-u5c5a7402e8/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk22-u5c5a7401f4/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk22",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 23,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk23-u5c5a7402e8/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk23-u5c5a7401f4/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk23",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 24,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk24-u5c5a7402e8/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk24-u5c5a7401f4/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk24",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 25,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk25-u5c5a7402e8/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk25-u5c5a7401f4/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk25",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 26,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk26-u5c5a7402e8/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk26-u5c5a7401f4/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk26",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 27,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk27-u5c5a7402e9/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk27-u5c5a7401f4/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk27",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 28,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk28-u5c5a7402e9/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk28-u5c5a7401f6/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk28",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 29,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk29-u5c5a7402e9/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk29-u5c5a7401f6/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk29",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 30,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk30-u5c5a7402e9/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk30-u5c5a7401f6/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk30",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 31,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk31-u5c5a7402e9/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk31-u5c5a7401f6/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk31",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 32,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk32-u5c5a7402e9/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk32-u5c5a7401f6/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk32",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 33,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk33-u5c5a7402e9/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk33-u5c5a7401f6/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk33",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 34,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk34-u5c5a7402e9/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk34-u5c5a7401f6/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk34",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 35,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk35-u5c5a7402e9/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk35-u5c5a7401f6/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk35",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 36,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk36-u5c5a7402e9/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk36-u5c5a7401f6/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk36",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 37,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk37-u5c5a7402e9/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk37-u5c5a7401f6/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk37",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 38,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk38-u5c5a7402e9/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk38-u5c5a7401f6/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk38",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 39,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk39-u5c5a7402e9/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk39-u5c5a7401f6/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk39",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 40,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk40-u5c5a7402ea/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk40-u5c5a7401f6/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk40",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 41,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk41-u5c5a7402ea/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk41-u5c5a7401f6/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk41",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 42,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk42-u5c5a7402ea/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk42-u5c5a7401f6/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk42",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 43,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk43-u5c5a7402ea/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk43-u5c5a7401f6/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk43",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 44,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_comments_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/bam_comments.json",
                            "chunk_genome_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk44-u5c5a7402ea/files/genome_output.bam",
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk44-u5c5a7401f6/files/tags.fastq.lz4",
                            "gem_group": 1,
                            "library_id": "0",
                            "library_info_json": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/split-u5c5a740e02/files/libraries.json",
                            "library_type": "Gene Expression",
                            "skip_translate": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk44",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "valexp": "self.feature_reference",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "feature_reference",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "feature_counts",
                            "type": "json",
                            "valexp": "SUMMARIZE_READ_REPORTS.feature_counts",
                            "mode": "reference",
                            "output": "feature_counts",
                            "sweep": false,
                            "sweepRootId": "feature_counts",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/join-u5c5a7401e0/files/feature_counts.json",
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "valexp": "self.is_antibody_only",
                            "mode": "reference",
                            "output": "is_antibody_only",
                            "sweep": false,
                            "sweepRootId": "is_antibody_only",
                            "node": "DETECT_CHEMISTRY",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "barcode_confidence_threshold",
                            "type": "float",
                            "valexp": "self.barcode_confidence_threshold",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "barcode_confidence_threshold",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": 0.975,
                            "waiting": false
                        },
                        {
                            "id": "umi_min_qual_threshold",
                            "type": "int",
                            "valexp": "self.umi_min_qual_threshold",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "umi_min_qual_threshold",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": 10,
                            "waiting": false
                        },
                        {
                            "id": "tags",
                            "type": "fastq",
                            "valexp": "SUMMARIZE_READ_REPORTS.tags",
                            "mode": "reference",
                            "output": "tags",
                            "sweep": false,
                            "sweepRootId": "tags",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": [
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk00-u5c5a7401f2/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk01-u5c5a7401f2/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk02-u5c5a7401f2/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk03-u5c5a7401f2/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk04-u5c5a7401f2/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk05-u5c5a7401f2/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk06-u5c5a7401f2/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk07-u5c5a7401f2/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk08-u5c5a7401f2/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk09-u5c5a7401f3/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk10-u5c5a7401f3/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk11-u5c5a7401f3/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk12-u5c5a7401f3/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk13-u5c5a7401f3/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk14-u5c5a7401f3/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk15-u5c5a7401f3/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk16-u5c5a7401f3/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk17-u5c5a7401f3/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk18-u5c5a7401f3/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk19-u5c5a7401f4/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk20-u5c5a7401f4/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk21-u5c5a7401f4/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk22-u5c5a7401f4/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk23-u5c5a7401f4/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk24-u5c5a7401f4/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk25-u5c5a7401f4/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk26-u5c5a7401f4/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk27-u5c5a7401f4/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk28-u5c5a7401f6/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk29-u5c5a7401f6/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk30-u5c5a7401f6/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk31-u5c5a7401f6/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk32-u5c5a7401f6/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk33-u5c5a7401f6/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk34-u5c5a7401f6/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk35-u5c5a7401f6/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk36-u5c5a7401f6/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk37-u5c5a7401f6/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk38-u5c5a7401f6/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk39-u5c5a7401f6/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk40-u5c5a7401f6/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk41-u5c5a7401f6/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk42-u5c5a7401f6/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk43-u5c5a7401f6/files/tags.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk44-u5c5a7401f6/files/tags.fastq.lz4"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/ref/mm9/mm9_usethis",
                            "waiting": false
                        },
                        {
                            "id": "library_types",
                            "type": "string",
                            "valexp": "SUMMARIZE_READ_REPORTS.library_types",
                            "mode": "reference",
                            "output": "library_types",
                            "sweep": false,
                            "sweepRootId": "library_types",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": [
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "library_ids",
                            "type": "string",
                            "valexp": "SUMMARIZE_READ_REPORTS.library_ids",
                            "mode": "reference",
                            "output": "library_ids",
                            "sweep": false,
                            "sweepRootId": "library_ids",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": [
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "chemistry_def",
                            "type": "map",
                            "valexp": "self.chemistry_def",
                            "mode": "reference",
                            "output": "chemistry_def",
                            "sweep": false,
                            "sweepRootId": "chemistry_def",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "barcode_whitelist",
                            "type": "string",
                            "valexp": "self.barcode_whitelist",
                            "mode": "reference",
                            "output": "barcode_whitelist",
                            "sweep": false,
                            "sweepRootId": "barcode_whitelist",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": "3M-february-2018",
                            "waiting": false
                        },
                        {
                            "id": "bam_comments",
                            "type": "string",
                            "valexp": "SUMMARIZE_READ_REPORTS.bam_comments",
                            "mode": "reference",
                            "output": "bam_comments",
                            "sweep": false,
                            "sweepRootId": "bam_comments",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": [
                                "10x_bam_to_fastq:I1(BC:QT)",
                                "10x_bam_to_fastq:R1(CR:CY,UR:UY)",
                                "10x_bam_to_fastq:R2(SEQ:QUAL)"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "skip_metrics",
                            "type": "bool",
                            "valexp": "self.skip_metrics",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "skip_metrics",
                            "node": "_BASIC_SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "correct_barcodes",
                            "type": "bool",
                            "valexp": "self.correct_barcodes",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "correct_barcodes",
                            "node": "_BASIC_SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "library_info",
                            "type": "map",
                            "valexp": "self.library_info",
                            "mode": "reference",
                            "output": "library_info",
                            "sweep": false,
                            "sweepRootId": "library_info",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "gem_group": 1,
                                    "library_id": "0",
                                    "library_type": "Gene Expression"
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "genome_inputs",
                            "type": "bam",
                            "valexp": "ALIGN_READS.genome_output",
                            "mode": "reference",
                            "output": "genome_output",
                            "sweep": false,
                            "sweepRootId": "genome_inputs",
                            "node": "ALIGN_READS",
                            "matchedFork": 0,
                            "value": [
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk00-u5c5a7402e7/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk01-u5c5a7402e7/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk02-u5c5a7402e7/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk03-u5c5a7402e7/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk04-u5c5a7402e7/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk05-u5c5a7402e7/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk06-u5c5a7402e7/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk07-u5c5a7402e7/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk08-u5c5a7402e7/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk09-u5c5a7402e7/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk10-u5c5a7402e7/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk11-u5c5a7402e7/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk12-u5c5a7402e7/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk13-u5c5a7402e8/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk14-u5c5a7402e8/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk15-u5c5a7402e8/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk16-u5c5a7402e8/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk17-u5c5a7402e8/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk18-u5c5a7402e8/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk19-u5c5a7402e8/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk20-u5c5a7402e8/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk21-u5c5a7402e8/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk22-u5c5a7402e8/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk23-u5c5a7402e8/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk24-u5c5a7402e8/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk25-u5c5a7402e8/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk26-u5c5a7402e8/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk27-u5c5a7402e9/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk28-u5c5a7402e9/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk29-u5c5a7402e9/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk30-u5c5a7402e9/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk31-u5c5a7402e9/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk32-u5c5a7402e9/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk33-u5c5a7402e9/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk34-u5c5a7402e9/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk35-u5c5a7402e9/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk36-u5c5a7402e9/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk37-u5c5a7402e9/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk38-u5c5a7402e9/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk39-u5c5a7402e9/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk40-u5c5a7402ea/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk41-u5c5a7402ea/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk42-u5c5a7402ea/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk43-u5c5a7402ea/files/genome_output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ALIGN_READS/fork0/chnk44-u5c5a7402ea/files/genome_output.bam"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "gem_groups",
                            "type": "int",
                            "valexp": "SUMMARIZE_READ_REPORTS.gem_groups",
                            "mode": "reference",
                            "output": "gem_groups",
                            "sweep": false,
                            "sweepRootId": "gem_groups",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": [
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1
                            ],
                            "waiting": false
                        },
                        {
                            "id": "annotation_params",
                            "type": "map",
                            "valexp": "self.annotation_params",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "annotation_params",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "rescue_multimappers",
                            "type": "bool",
                            "valexp": "self.rescue_multimappers",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "rescue_multimappers",
                            "node": "_BASIC_SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "barcode_counts",
                            "type": "json",
                            "valexp": "SUMMARIZE_READ_REPORTS.barcode_counts",
                            "mode": "reference",
                            "output": "barcode_counts",
                            "sweep": false,
                            "sweepRootId": "barcode_counts",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/join-u5c5a7401e0/files/barcode_counts.json",
                            "waiting": false
                        },
                        {
                            "id": "skip_translate",
                            "type": "map",
                            "valexp": "self.skip_translate",
                            "mode": "reference",
                            "output": "skip_translate",
                            "sweep": false,
                            "sweepRootId": "skip_translate",
                            "node": "CHECK_BARCODES_COMPATIBILITY",
                            "matchedFork": 0,
                            "value": {},
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/counter/attach_bcs_and_umis"
    },
    {
        "name": "BUCKET_BY_BC",
        "fqname": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk00-u5c5a740e05/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "LB": "0.1",
                                    "ID": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "PL": "ILLUMINA",
                                    "SM": "10X_G171C_mm9_2000"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk01-u5c5a740e05/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "LB": "0.1",
                                    "ID": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "PL": "ILLUMINA",
                                    "SM": "10X_G171C_mm9_2000"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk02-u5c5a740e05/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "LB": "0.1",
                                    "ID": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "PL": "ILLUMINA",
                                    "SM": "10X_G171C_mm9_2000"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk03-u5c5a740e05/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "LB": "0.1",
                                    "ID": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "PL": "ILLUMINA",
                                    "SM": "10X_G171C_mm9_2000"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk04-u5c5a740e05/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "LB": "0.1",
                                    "ID": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "PL": "ILLUMINA",
                                    "SM": "10X_G171C_mm9_2000"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk05-u5c5a740e05/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "LB": "0.1",
                                    "ID": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "PL": "ILLUMINA",
                                    "SM": "10X_G171C_mm9_2000"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk06-u5c5a740e05/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "LB": "0.1",
                                    "ID": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "PL": "ILLUMINA",
                                    "SM": "10X_G171C_mm9_2000"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 7,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk07-u5c5a740e05/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "LB": "0.1",
                                    "ID": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "PL": "ILLUMINA",
                                    "SM": "10X_G171C_mm9_2000"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 8,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk08-u5c5a740e05/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "LB": "0.1",
                                    "ID": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "PL": "ILLUMINA",
                                    "SM": "10X_G171C_mm9_2000"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 9,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk09-u5c5a740e05/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "LB": "0.1",
                                    "ID": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "PL": "ILLUMINA",
                                    "SM": "10X_G171C_mm9_2000"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 10,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk10-u5c5a740e06/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "LB": "0.1",
                                    "ID": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "PL": "ILLUMINA",
                                    "SM": "10X_G171C_mm9_2000"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 11,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk11-u5c5a740e06/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "LB": "0.1",
                                    "ID": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "PL": "ILLUMINA",
                                    "SM": "10X_G171C_mm9_2000"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 12,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk12-u5c5a740e06/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "LB": "0.1",
                                    "ID": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "PL": "ILLUMINA",
                                    "SM": "10X_G171C_mm9_2000"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 13,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk13-u5c5a740e06/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "LB": "0.1",
                                    "ID": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "PL": "ILLUMINA",
                                    "SM": "10X_G171C_mm9_2000"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 14,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk14-u5c5a740e06/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "LB": "0.1",
                                    "ID": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "PL": "ILLUMINA",
                                    "SM": "10X_G171C_mm9_2000"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 15,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk15-u5c5a740e06/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "LB": "0.1",
                                    "ID": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "PL": "ILLUMINA",
                                    "SM": "10X_G171C_mm9_2000"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 16,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk16-u5c5a740e06/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "LB": "0.1",
                                    "ID": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "PL": "ILLUMINA",
                                    "SM": "10X_G171C_mm9_2000"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 17,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk17-u5c5a740e06/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "LB": "0.1",
                                    "ID": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "PL": "ILLUMINA",
                                    "SM": "10X_G171C_mm9_2000"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 18,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk18-u5c5a740e06/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "LB": "0.1",
                                    "ID": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "PL": "ILLUMINA",
                                    "SM": "10X_G171C_mm9_2000"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 19,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk19-u5c5a740e06/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "LB": "0.1",
                                    "ID": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "PL": "ILLUMINA",
                                    "SM": "10X_G171C_mm9_2000"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 20,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk20-u5c5a740e06/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "LB": "0.1",
                                    "ID": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "PL": "ILLUMINA",
                                    "SM": "10X_G171C_mm9_2000"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 21,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk21-u5c5a740e06/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "LB": "0.1",
                                    "ID": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "PL": "ILLUMINA",
                                    "SM": "10X_G171C_mm9_2000"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 22,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk22-u5c5a740e06/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "LB": "0.1",
                                    "ID": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "PL": "ILLUMINA",
                                    "SM": "10X_G171C_mm9_2000"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 23,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk23-u5c5a740e06/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "LB": "0.1",
                                    "ID": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "PL": "ILLUMINA",
                                    "SM": "10X_G171C_mm9_2000"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 24,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk24-u5c5a740e06/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "LB": "0.1",
                                    "ID": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "PL": "ILLUMINA",
                                    "SM": "10X_G171C_mm9_2000"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 25,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk25-u5c5a740e07/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "LB": "0.1",
                                    "ID": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "PL": "ILLUMINA",
                                    "SM": "10X_G171C_mm9_2000"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 26,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk26-u5c5a740e07/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "LB": "0.1",
                                    "ID": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "PL": "ILLUMINA",
                                    "SM": "10X_G171C_mm9_2000"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 27,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk27-u5c5a740e07/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "LB": "0.1",
                                    "ID": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "PL": "ILLUMINA",
                                    "SM": "10X_G171C_mm9_2000"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 28,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk28-u5c5a740e07/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "LB": "0.1",
                                    "ID": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "PL": "ILLUMINA",
                                    "SM": "10X_G171C_mm9_2000"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 29,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk29-u5c5a740e07/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "LB": "0.1",
                                    "ID": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "PL": "ILLUMINA",
                                    "SM": "10X_G171C_mm9_2000"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 30,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk30-u5c5a740e07/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "LB": "0.1",
                                    "ID": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "PL": "ILLUMINA",
                                    "SM": "10X_G171C_mm9_2000"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 31,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk31-u5c5a740e07/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "LB": "0.1",
                                    "ID": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "PL": "ILLUMINA",
                                    "SM": "10X_G171C_mm9_2000"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 32,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk32-u5c5a740e07/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "LB": "0.1",
                                    "ID": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "PL": "ILLUMINA",
                                    "SM": "10X_G171C_mm9_2000"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 33,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk33-u5c5a740e07/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "LB": "0.1",
                                    "ID": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "PL": "ILLUMINA",
                                    "SM": "10X_G171C_mm9_2000"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 34,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk34-u5c5a740e07/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "LB": "0.1",
                                    "ID": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "PL": "ILLUMINA",
                                    "SM": "10X_G171C_mm9_2000"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 35,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk35-u5c5a740e07/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "LB": "0.1",
                                    "ID": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "PL": "ILLUMINA",
                                    "SM": "10X_G171C_mm9_2000"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 36,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk36-u5c5a740e07/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "LB": "0.1",
                                    "ID": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "PL": "ILLUMINA",
                                    "SM": "10X_G171C_mm9_2000"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 37,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk37-u5c5a740e07/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "LB": "0.1",
                                    "ID": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "PL": "ILLUMINA",
                                    "SM": "10X_G171C_mm9_2000"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 38,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk38-u5c5a740e07/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "LB": "0.1",
                                    "ID": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "PL": "ILLUMINA",
                                    "SM": "10X_G171C_mm9_2000"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 39,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk39-u5c5a740e08/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "LB": "0.1",
                                    "ID": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "PL": "ILLUMINA",
                                    "SM": "10X_G171C_mm9_2000"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 40,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk40-u5c5a740e08/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "LB": "0.1",
                                    "ID": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "PL": "ILLUMINA",
                                    "SM": "10X_G171C_mm9_2000"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 41,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk41-u5c5a740e08/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "LB": "0.1",
                                    "ID": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "PL": "ILLUMINA",
                                    "SM": "10X_G171C_mm9_2000"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 42,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk42-u5c5a740e08/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "LB": "0.1",
                                    "ID": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "PL": "ILLUMINA",
                                    "SM": "10X_G171C_mm9_2000"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 43,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 2,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk43-u5c5a740e08/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "LB": "0.1",
                                    "ID": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "PL": "ILLUMINA",
                                    "SM": "10X_G171C_mm9_2000"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 44,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 2,
                            "__vmem_gb": 7,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk44-u5c5a740e08/files/output.bam",
                            "read_groups": [
                                {
                                    "PU": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "LB": "0.1",
                                    "ID": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "PL": "ILLUMINA",
                                    "SM": "10X_G171C_mm9_2000"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "inputs",
                            "type": "bam",
                            "valexp": "ATTACH_BCS_AND_UMIS.output",
                            "mode": "reference",
                            "output": "output",
                            "sweep": false,
                            "sweepRootId": "inputs",
                            "node": "ATTACH_BCS_AND_UMIS",
                            "matchedFork": 0,
                            "value": [
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk00-u5c5a740e05/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk01-u5c5a740e05/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk02-u5c5a740e05/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk03-u5c5a740e05/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk04-u5c5a740e05/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk05-u5c5a740e05/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk06-u5c5a740e05/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk07-u5c5a740e05/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk08-u5c5a740e05/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk09-u5c5a740e05/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk10-u5c5a740e06/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk11-u5c5a740e06/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk12-u5c5a740e06/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk13-u5c5a740e06/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk14-u5c5a740e06/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk15-u5c5a740e06/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk16-u5c5a740e06/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk17-u5c5a740e06/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk18-u5c5a740e06/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk19-u5c5a740e06/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk20-u5c5a740e06/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk21-u5c5a740e06/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk22-u5c5a740e06/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk23-u5c5a740e06/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk24-u5c5a740e06/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk25-u5c5a740e07/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk26-u5c5a740e07/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk27-u5c5a740e07/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk28-u5c5a740e07/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk29-u5c5a740e07/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk30-u5c5a740e07/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk31-u5c5a740e07/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk32-u5c5a740e07/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk33-u5c5a740e07/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk34-u5c5a740e07/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk35-u5c5a740e07/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk36-u5c5a740e07/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk37-u5c5a740e07/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk38-u5c5a740e07/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk39-u5c5a740e08/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk40-u5c5a740e08/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk41-u5c5a740e08/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk42-u5c5a740e08/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk43-u5c5a740e08/files/output.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/chnk44-u5c5a740e08/files/output.bam"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "num_alignments",
                            "type": "int",
                            "valexp": "ATTACH_BCS_AND_UMIS.num_alignments",
                            "mode": "reference",
                            "output": "num_alignments",
                            "sweep": false,
                            "sweepRootId": "num_alignments",
                            "node": "ATTACH_BCS_AND_UMIS",
                            "matchedFork": 0,
                            "value": [
                                5363030,
                                5367094,
                                5364590,
                                5365152,
                                5363268,
                                5358196,
                                5363728,
                                5367191,
                                5366745,
                                5365369,
                                5359535,
                                5364342,
                                5365054,
                                5364846,
                                5361866,
                                5362893,
                                5358896,
                                5360165,
                                5365237,
                                5366768,
                                5365491,
                                5370306,
                                5364678,
                                5359308,
                                5365944,
                                5363971,
                                5364760,
                                5364166,
                                5364343,
                                5355741,
                                5365429,
                                5365827,
                                5365185,
                                5368386,
                                5367252,
                                5360204,
                                5366555,
                                5363592,
                                5365033,
                                5359837,
                                5362960,
                                5364448,
                                5365198,
                                5367955,
                                2422497
                            ],
                            "waiting": false
                        },
                        {
                            "id": "nbases",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "nbases",
                            "node": "BUCKET_BY_BC",
                            "matchedFork": 0,
                            "value": 2,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/counter/bucket_reads_by_bc"
    },
    {
        "name": "CHUNK_READS",
        "fqname": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 4,
                            "__vmem_gb": 4,
                            "read_chunk": {
                                "gem_group": 1,
                                "library_type": "Gene Expression",
                                "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "subsample_rate": 1.0,
                                "library_id": "0",
                                "read_chunks": {
                                    "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/H3LTJBBXX/10X_G171C_MissingLibrary_1_H3LTJBBXX/G171C_S2_L007_I1_001.fastq.gz",
                                    "I2": null,
                                    "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/H3LTJBBXX/10X_G171C_MissingLibrary_1_H3LTJBBXX/G171C_S2_L007_R1_001.fastq.gz",
                                    "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/H3LTJBBXX/10X_G171C_MissingLibrary_1_H3LTJBBXX/G171C_S2_L007_R2_001.fastq.gz"
                                },
                                "chemistry": {
                                    "si_read_offset": 0,
                                    "strandedness": "+",
                                    "umi_read_offset": 16,
                                    "barcode_read_type": "R1",
                                    "umi_read_type": "R1",
                                    "barcode_read_length": 16,
                                    "rna_read_type": "R2",
                                    "barcode_whitelist": "3M-february-2018",
                                    "si_read_type": "I1",
                                    "rna_read_length": null,
                                    "description": "Single Cell 3' v3",
                                    "rna_read_offset": 0,
                                    "barcode_read_offset": 0,
                                    "rna_read2_type": null,
                                    "endedness": "three_prime",
                                    "name": "SC3Pv3",
                                    "umi_read_length": 12,
                                    "si_read_length": null,
                                    "read_type_to_bcl2fastq_filename": {
                                        "I1": "I1",
                                        "I2": null,
                                        "R1": "R1",
                                        "R2": "R2"
                                    },
                                    "rna_read2_length": null,
                                    "rna_read2_offset": 0,
                                    "read_type_to_bcl_processor_filename": {
                                        "I1": "I1",
                                        "I2": "I2",
                                        "R1": "RA",
                                        "R2": null
                                    }
                                },
                                "reads_interleaved": false
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "chunks",
                            "type": "map",
                            "valexp": "self.chunks",
                            "mode": "reference",
                            "output": "chunks",
                            "sweep": false,
                            "sweepRootId": "chunks",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/H3LTJBBXX/10X_G171C_MissingLibrary_1_H3LTJBBXX/G171C_S2_L007_I1_001.fastq.gz",
                                        "I2": null,
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/H3LTJBBXX/10X_G171C_MissingLibrary_1_H3LTJBBXX/G171C_S2_L007_R1_001.fastq.gz",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/H3LTJBBXX/10X_G171C_MissingLibrary_1_H3LTJBBXX/G171C_S2_L007_R2_001.fastq.gz"
                                    },
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "reads_interleaved": false
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "reads_per_file",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reads_per_file",
                            "node": "CHUNK_READS",
                            "matchedFork": 0,
                            "value": 5000000,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/common/chunk_reads"
    },
    {
        "name": "COUNT_GENES",
        "fqname": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 12,
                    "__vmem_gb": 15
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk00-u5c5a741ec9/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk00",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk01-u5c5a741ec9/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk01",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk02-u5c5a741eca/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk02",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk03-u5c5a741eca/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk03",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk04-u5c5a741eca/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk04",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk05-u5c5a741eca/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk05",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk06-u5c5a741eca/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk06",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 7,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk07-u5c5a741eca/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk07",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 8,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk08-u5c5a741eca/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk08",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 9,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk09-u5c5a741eca/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk09",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 10,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk10-u5c5a741eca/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk10",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 11,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk11-u5c5a741eca/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk11",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 12,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk12-u5c5a741eca/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk12",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 13,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk13-u5c5a741eca/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk13",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 14,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk14-u5c5a741ecb/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk14",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 15,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk15-u5c5a741ecb/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk15",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 16,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk16-u5c5a741ecb/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk16",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 17,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk17-u5c5a741ecb/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk17",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 18,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk18-u5c5a741ecb/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk18",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 19,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk19-u5c5a741ecb/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk19",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 20,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk20-u5c5a741ecb/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk20",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 21,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk21-u5c5a741ecb/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk21",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 22,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk22-u5c5a741ecb/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk22",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 23,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk23-u5c5a741ecb/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk23",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 24,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk24-u5c5a741ecb/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk24",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 25,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk25-u5c5a741ecb/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk25",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 26,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk26-u5c5a741ecb/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk26",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 27,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk27-u5c5a741ecc/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk27",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 28,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk28-u5c5a741ecc/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk28",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 29,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk29-u5c5a741ecc/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk29",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 30,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk30-u5c5a741ecc/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk30",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 31,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk31-u5c5a741ecc/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk31",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 32,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk32-u5c5a741ecc/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk32",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 33,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk33-u5c5a741ecc/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk33",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 34,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk34-u5c5a741ecc/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk34",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 35,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk35-u5c5a741ecc/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk35",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 36,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk36-u5c5a741ecc/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk36",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 37,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk37-u5c5a741ecd/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk37",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 38,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk38-u5c5a741ecd/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk38",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 39,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk39-u5c5a741ecd/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk39",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 40,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk40-u5c5a741ecd/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk40",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 41,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk41-u5c5a741ecd/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk41",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 42,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk42-u5c5a741ecd/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk42",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 43,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk43-u5c5a741ecd/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk43",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 44,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk44-u5c5a741ecd/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk44",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 45,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk45-u5c5a741ecd/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk45",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 46,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk46-u5c5a741ecd/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/chnk46",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "barcodes_detected",
                            "type": "csv",
                            "valexp": "ATTACH_BCS_AND_UMIS.barcodes_detected",
                            "mode": "reference",
                            "output": "barcodes_detected",
                            "sweep": false,
                            "sweepRootId": "barcodes_detected",
                            "node": "ATTACH_BCS_AND_UMIS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/join-u5c5a740e02/files/barcodes_detected.csv",
                            "waiting": false
                        },
                        {
                            "id": "sample_id",
                            "type": "string",
                            "valexp": "self.sample_id",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_id",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "10X_G171C_mm9_2000",
                            "waiting": false
                        },
                        {
                            "id": "inputs",
                            "type": "bam",
                            "valexp": "MARK_DUPLICATES.output",
                            "mode": "reference",
                            "output": "output",
                            "sweep": false,
                            "sweepRootId": "inputs",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": [
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk00-u5c5a741ec9/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk01-u5c5a741ec9/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk02-u5c5a741eca/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk03-u5c5a741eca/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk04-u5c5a741eca/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk05-u5c5a741eca/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk06-u5c5a741eca/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk07-u5c5a741eca/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk08-u5c5a741eca/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk09-u5c5a741eca/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk10-u5c5a741eca/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk11-u5c5a741eca/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk12-u5c5a741eca/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk13-u5c5a741eca/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk14-u5c5a741ecb/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk15-u5c5a741ecb/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk16-u5c5a741ecb/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk17-u5c5a741ecb/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk18-u5c5a741ecb/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk19-u5c5a741ecb/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk20-u5c5a741ecb/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk21-u5c5a741ecb/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk22-u5c5a741ecb/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk23-u5c5a741ecb/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk24-u5c5a741ecb/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk25-u5c5a741ecb/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk26-u5c5a741ecb/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk27-u5c5a741ecc/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk28-u5c5a741ecc/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk29-u5c5a741ecc/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk30-u5c5a741ecc/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk31-u5c5a741ecc/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk32-u5c5a741ecc/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk33-u5c5a741ecc/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk34-u5c5a741ecc/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk35-u5c5a741ecc/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk36-u5c5a741ecc/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk37-u5c5a741ecd/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk38-u5c5a741ecd/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk39-u5c5a741ecd/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk40-u5c5a741ecd/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk41-u5c5a741ecd/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk42-u5c5a741ecd/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk43-u5c5a741ecd/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk44-u5c5a741ecd/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk45-u5c5a741ecd/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk46-u5c5a741ecd/files/alignments.bam"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/ref/mm9/mm9_usethis",
                            "waiting": false
                        },
                        {
                            "id": "gem_groups",
                            "type": "int",
                            "valexp": "SUMMARIZE_READ_REPORTS.gem_groups",
                            "mode": "reference",
                            "output": "gem_groups",
                            "sweep": false,
                            "sweepRootId": "gem_groups",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": [
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1
                            ],
                            "waiting": false
                        },
                        {
                            "id": "barcode_whitelist",
                            "type": "string",
                            "valexp": "self.barcode_whitelist",
                            "mode": "reference",
                            "output": "barcode_whitelist",
                            "sweep": false,
                            "sweepRootId": "barcode_whitelist",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": "3M-february-2018",
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "valexp": "self.feature_reference",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "feature_reference",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "align",
                            "type": "map",
                            "valexp": "SUMMARIZE_READ_REPORTS.align",
                            "mode": "reference",
                            "output": "align",
                            "sweep": false,
                            "sweepRootId": "align",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": {
                                "aligner": "star",
                                "high_conf_mapq": 255
                            },
                            "waiting": false
                        },
                        {
                            "id": "chemistry_def",
                            "type": "map",
                            "valexp": "self.chemistry_def",
                            "mode": "reference",
                            "output": "chemistry_def",
                            "sweep": false,
                            "sweepRootId": "chemistry_def",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "valexp": "self.is_antibody_only",
                            "mode": "reference",
                            "output": "is_antibody_only",
                            "sweep": false,
                            "sweepRootId": "is_antibody_only",
                            "node": "DETECT_CHEMISTRY",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/counter/count_genes"
    },
    {
        "name": "EXTRACT_READS",
        "fqname": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 8,
                    "__vmem_gb": 11
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0000.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0000.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0000.fastq.lz4"
                            },
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk00",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0001.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0001.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0001.fastq.lz4"
                            },
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk01",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0002.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0002.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0002.fastq.lz4"
                            },
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk02",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0003.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0003.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0003.fastq.lz4"
                            },
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk03",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0004.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0004.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0004.fastq.lz4"
                            },
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk04",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0005.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0005.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0005.fastq.lz4"
                            },
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk05",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0006.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0006.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0006.fastq.lz4"
                            },
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk06",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 7,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0007.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0007.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0007.fastq.lz4"
                            },
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk07",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 8,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0008.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0008.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0008.fastq.lz4"
                            },
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk08",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 9,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0009.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0009.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0009.fastq.lz4"
                            },
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk09",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 10,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0010.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0010.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0010.fastq.lz4"
                            },
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk10",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 11,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0011.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0011.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0011.fastq.lz4"
                            },
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk11",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 12,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0012.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0012.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0012.fastq.lz4"
                            },
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk12",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 13,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0013.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0013.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0013.fastq.lz4"
                            },
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk13",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 14,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0014.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0014.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0014.fastq.lz4"
                            },
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk14",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 15,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0015.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0015.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0015.fastq.lz4"
                            },
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk15",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 16,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0016.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0016.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0016.fastq.lz4"
                            },
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk16",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 17,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0017.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0017.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0017.fastq.lz4"
                            },
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk17",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 18,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0018.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0018.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0018.fastq.lz4"
                            },
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk18",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 19,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0019.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0019.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0019.fastq.lz4"
                            },
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk19",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 20,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0020.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0020.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0020.fastq.lz4"
                            },
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk20",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 21,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0021.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0021.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0021.fastq.lz4"
                            },
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk21",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 22,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0022.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0022.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0022.fastq.lz4"
                            },
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk22",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 23,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0023.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0023.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0023.fastq.lz4"
                            },
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk23",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 24,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0024.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0024.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0024.fastq.lz4"
                            },
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk24",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 25,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0025.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0025.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0025.fastq.lz4"
                            },
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk25",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 26,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0026.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0026.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0026.fastq.lz4"
                            },
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk26",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 27,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0027.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0027.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0027.fastq.lz4"
                            },
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk27",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 28,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0028.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0028.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0028.fastq.lz4"
                            },
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk28",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 29,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0029.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0029.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0029.fastq.lz4"
                            },
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk29",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 30,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0030.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0030.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0030.fastq.lz4"
                            },
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk30",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 31,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0031.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0031.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0031.fastq.lz4"
                            },
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk31",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 32,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0032.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0032.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0032.fastq.lz4"
                            },
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk32",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 33,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0033.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0033.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0033.fastq.lz4"
                            },
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk33",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 34,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0034.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0034.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0034.fastq.lz4"
                            },
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk34",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 35,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0035.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0035.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0035.fastq.lz4"
                            },
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk35",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 36,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0036.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0036.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0036.fastq.lz4"
                            },
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk36",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 37,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0037.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0037.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0037.fastq.lz4"
                            },
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk37",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 38,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0038.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0038.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0038.fastq.lz4"
                            },
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk38",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 39,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0039.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0039.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0039.fastq.lz4"
                            },
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk39",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 40,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0040.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0040.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0040.fastq.lz4"
                            },
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk40",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 41,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0041.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0041.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0041.fastq.lz4"
                            },
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk41",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 42,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0042.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0042.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0042.fastq.lz4"
                            },
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk42",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 43,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0043.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0043.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0043.fastq.lz4"
                            },
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk43",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 44,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9,
                            "chemistry": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "chunk_initial_reads": null,
                            "chunk_subsample_rate": 1.0,
                            "gem_group": 1,
                            "library_id": "0",
                            "library_type": "Gene Expression",
                            "read_chunks": {
                                "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0044.fastq.lz4",
                                "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0044.fastq.lz4",
                                "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0044.fastq.lz4"
                            },
                            "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                            "reads_interleaved": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk44",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "augment_fastq",
                            "type": "bool",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "augment_fastq",
                            "node": "EXTRACT_READS",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "library_info",
                            "type": "map",
                            "valexp": "self.library_info",
                            "mode": "reference",
                            "output": "library_info",
                            "sweep": false,
                            "sweepRootId": "library_info",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "gem_group": 1,
                                    "library_id": "0",
                                    "library_type": "Gene Expression"
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "reads_per_file",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reads_per_file",
                            "node": "EXTRACT_READS",
                            "matchedFork": 0,
                            "value": 5000000,
                            "waiting": false
                        },
                        {
                            "id": "initial_reads",
                            "type": "int",
                            "valexp": "self.initial_reads",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "initial_reads",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "r2_length",
                            "type": "int",
                            "valexp": "self.r2_length",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "r2_length",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "subsample_rate",
                            "type": "float",
                            "valexp": "self.subsample_rate",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "subsample_rate",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": 1,
                            "waiting": false
                        },
                        {
                            "id": "skip_metrics",
                            "type": "bool",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "skip_metrics",
                            "node": "EXTRACT_READS",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "valexp": "self.feature_reference",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "feature_reference",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "barcode_whitelist",
                            "type": "string",
                            "valexp": "self.barcode_whitelist",
                            "mode": "reference",
                            "output": "barcode_whitelist",
                            "sweep": false,
                            "sweepRootId": "barcode_whitelist",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": "3M-february-2018",
                            "waiting": false
                        },
                        {
                            "id": "align",
                            "type": "map",
                            "valexp": "self.align",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "align",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": {
                                "aligner": "star",
                                "high_conf_mapq": null
                            },
                            "waiting": false
                        },
                        {
                            "id": "r1_length",
                            "type": "int",
                            "valexp": "self.r1_length",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "r1_length",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/ref/mm9/mm9_usethis",
                            "waiting": false
                        },
                        {
                            "id": "chunks",
                            "type": "map",
                            "valexp": "CHUNK_READS.out_chunks",
                            "mode": "reference",
                            "output": "out_chunks",
                            "sweep": false,
                            "sweepRootId": "chunks",
                            "node": "CHUNK_READS",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0000.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0000.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0000.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0001.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0001.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0001.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0002.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0002.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0002.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0003.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0003.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0003.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0004.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0004.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0004.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0005.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0005.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0005.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0006.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0006.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0006.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0007.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0007.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0007.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0008.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0008.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0008.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0009.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0009.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0009.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0010.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0010.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0010.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0011.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0011.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0011.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0012.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0012.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0012.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0013.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0013.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0013.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0014.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0014.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0014.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0015.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0015.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0015.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0016.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0016.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0016.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0017.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0017.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0017.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0018.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0018.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0018.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0019.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0019.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0019.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0020.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0020.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0020.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0021.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0021.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0021.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0022.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0022.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0022.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0023.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0023.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0023.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0024.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0024.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0024.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0025.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0025.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0025.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0026.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0026.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0026.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0027.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0027.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0027.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0028.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0028.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0028.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0029.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0029.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0029.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0030.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0030.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0030.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0031.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0031.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0031.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0032.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0032.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0032.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0033.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0033.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0033.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0034.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0034.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0034.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0035.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0035.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0035.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0036.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0036.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0036.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0037.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0037.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0037.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0038.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0038.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0038.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0039.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0039.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0039.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0040.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0040.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0040.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0041.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0041.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0041.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0042.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0042.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0042.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0043.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0043.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0043.fastq.lz4"
                                    }
                                },
                                {
                                    "gem_group": 1,
                                    "library_type": "Gene Expression",
                                    "read_group": "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                    "subsample_rate": 1.0,
                                    "library_id": "0",
                                    "reads_interleaved": false,
                                    "chemistry": {
                                        "si_read_offset": 0,
                                        "strandedness": "+",
                                        "umi_read_offset": 16,
                                        "barcode_read_type": "R1",
                                        "umi_read_type": "R1",
                                        "barcode_read_length": 16,
                                        "rna_read_type": "R2",
                                        "barcode_whitelist": "3M-february-2018",
                                        "si_read_type": "I1",
                                        "rna_read_length": null,
                                        "description": "Single Cell 3' v3",
                                        "rna_read_offset": 0,
                                        "barcode_read_offset": 0,
                                        "rna_read2_type": null,
                                        "endedness": "three_prime",
                                        "name": "SC3Pv3",
                                        "umi_read_length": 12,
                                        "si_read_length": null,
                                        "read_type_to_bcl2fastq_filename": {
                                            "I1": "I1",
                                            "I2": null,
                                            "R1": "R1",
                                            "R2": "R2"
                                        },
                                        "rna_read2_length": null,
                                        "rna_read2_offset": 0,
                                        "read_type_to_bcl_processor_filename": {
                                            "I1": "I1",
                                            "I2": "I2",
                                            "R1": "RA",
                                            "R2": null
                                        }
                                    },
                                    "read_chunks": {
                                        "I1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/I1-0044.fastq.lz4",
                                        "R1": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R1-0044.fastq.lz4",
                                        "R2": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/CHUNK_READS/fork0/chnk0-u5c5a73f084/files/R2-0044.fastq.lz4"
                                    }
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "chemistry_def",
                            "type": "map",
                            "valexp": "self.chemistry_def",
                            "mode": "reference",
                            "output": "chemistry_def",
                            "sweep": false,
                            "sweepRootId": "chemistry_def",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "primers",
                            "type": "map",
                            "valexp": "self.primers",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "primers",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "name": "P5",
                                    "seq": "AATGATACGGCGACCACCGAGATCT"
                                },
                                {
                                    "name": "P7",
                                    "seq": "CAAGCAGAAGACGGCATACGAGAT"
                                },
                                {
                                    "name": "R1",
                                    "seq": "ACACTCTTTCCCTACACGACG"
                                },
                                {
                                    "name": "R2",
                                    "seq": "GTGACTGGAGTTCAGACGTGTG"
                                },
                                {
                                    "name": "switch_oligo",
                                    "seq": "AAGCAGTGGTATCAACGCAGAGTACATGGG"
                                },
                                {
                                    "name": "polyA",
                                    "seq": "AAAAAAAAAAAAAAAAAAAA"
                                }
                            ],
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/common/extract_reads"
    },
    {
        "name": "FILTER_BARCODES",
        "fqname": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 16,
                    "__vmem_gb": 19
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "matrices_h5",
                            "type": "h5",
                            "valexp": "COUNT_GENES.matrices_h5",
                            "mode": "reference",
                            "output": "matrices_h5",
                            "sweep": false,
                            "sweepRootId": "matrices_h5",
                            "node": "COUNT_GENES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/join-u5c5a742053/files/matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "barcode_summary",
                            "type": "h5",
                            "valexp": "COUNT_GENES.barcode_summary",
                            "mode": "reference",
                            "output": "barcode_summary",
                            "sweep": false,
                            "sweepRootId": "barcode_summary",
                            "node": "COUNT_GENES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/join-u5c5a742053/files/barcode_summary.h5",
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/ref/mm9/mm9_usethis",
                            "waiting": false
                        },
                        {
                            "id": "recovered_cells",
                            "type": "int",
                            "valexp": "self.recovered_cells",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "recovered_cells",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "barcode_whitelist",
                            "type": "string",
                            "valexp": "self.barcode_whitelist",
                            "mode": "reference",
                            "output": "barcode_whitelist",
                            "sweep": false,
                            "sweepRootId": "barcode_whitelist",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": "3M-february-2018",
                            "waiting": false
                        },
                        {
                            "id": "gem_groups",
                            "type": "int",
                            "valexp": "SUMMARIZE_READ_REPORTS.gem_groups",
                            "mode": "reference",
                            "output": "gem_groups",
                            "sweep": false,
                            "sweepRootId": "gem_groups",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": [
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1
                            ],
                            "waiting": false
                        },
                        {
                            "id": "barcode_correction_csv",
                            "type": "csv",
                            "valexp": "MARK_DUPLICATES.barcode_summary",
                            "mode": "reference",
                            "output": "barcode_summary",
                            "sweep": false,
                            "sweepRootId": "barcode_correction_csv",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/join-u5c5a741eaf/files/barcode_summary.csv",
                            "waiting": false
                        },
                        {
                            "id": "raw_fastq_summary",
                            "type": "json",
                            "valexp": "SUMMARIZE_READ_REPORTS.summary",
                            "mode": "reference",
                            "output": "summary",
                            "sweep": false,
                            "sweepRootId": "raw_fastq_summary",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/join-u5c5a7401e0/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "attach_bcs_summary",
                            "type": "json",
                            "valexp": "ATTACH_BCS_AND_UMIS.summary",
                            "mode": "reference",
                            "output": "summary",
                            "sweep": false,
                            "sweepRootId": "attach_bcs_summary",
                            "node": "ATTACH_BCS_AND_UMIS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/join-u5c5a740e02/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "cell_barcodes",
                            "type": "json",
                            "valexp": "self.cell_barcodes",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "cell_barcodes",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "sample_id",
                            "type": "string",
                            "valexp": "self.sample_id",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "sample_id",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "10X_G171C_mm9_2000",
                            "waiting": false
                        },
                        {
                            "id": "chemistry_def",
                            "type": "map",
                            "valexp": "self.chemistry_def",
                            "mode": "reference",
                            "output": "chemistry_def",
                            "sweep": false,
                            "sweepRootId": "chemistry_def",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "valexp": "self.is_antibody_only",
                            "mode": "reference",
                            "output": "is_antibody_only",
                            "sweep": false,
                            "sweepRootId": "is_antibody_only",
                            "node": "DETECT_CHEMISTRY",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "force_cells",
                            "type": "int",
                            "valexp": "self.force_cells",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "force_cells",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": 2000,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/counter/filter_barcodes"
    },
    {
        "name": "MARK_DUPLICATES",
        "fqname": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 4,
                    "__vmem_gb": 7
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 1,
                            "__vmem_gb": 19,
                            "bam_compression_ratio": 0.0811795076677218,
                            "chunk_end": 34375271251968,
                            "chunk_size_gb": 6.017378153191986,
                            "chunk_start": 124518400,
                            "major_barcode_proportion": 1.0
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk00",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 10,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "bam_compression_ratio": 0.0811795076677218,
                            "chunk_end": 68730344581859,
                            "chunk_size_gb": 6.013871664574118,
                            "chunk_start": 34375271251968,
                            "major_barcode_proportion": 0.20588235294117646
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk01",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "__mem_gb": 10,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "bam_compression_ratio": 0.0811795076677218,
                            "chunk_end": 100705410569681,
                            "chunk_size_gb": 5.5972573800270204,
                            "chunk_start": 68730344581859,
                            "major_barcode_proportion": 0.08797653958944282
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk02",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.0811795076677218,
                            "chunk_end": 132720291973421,
                            "chunk_size_gb": 5.604214934170312,
                            "chunk_start": 100705410569681,
                            "major_barcode_proportion": 0.060665362035225046
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk03",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "__mem_gb": 10,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "bam_compression_ratio": 0.0811795076677218,
                            "chunk_end": 164792136617394,
                            "chunk_size_gb": 5.614192628109704,
                            "chunk_start": 132720291973421,
                            "major_barcode_proportion": 0.07820136852394917
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk04",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.0811795076677218,
                            "chunk_end": 196926452652225,
                            "chunk_size_gb": 5.6251339909255496,
                            "chunk_start": 164792136617394,
                            "major_barcode_proportion": 0.03812316715542522
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk05",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.0811795076677218,
                            "chunk_end": 229038424331180,
                            "chunk_size_gb": 5.6212375215208015,
                            "chunk_start": 196926452652225,
                            "major_barcode_proportion": 0.03714565004887586
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk06",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 7,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.0811795076677218,
                            "chunk_end": 261168056739062,
                            "chunk_size_gb": 5.624322445875592,
                            "chunk_start": 229038424331180,
                            "major_barcode_proportion": 0.033268101761252444
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk07",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 8,
                        "chunkDef": {
                            "__mem_gb": 10,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "bam_compression_ratio": 0.0811795076677218,
                            "chunk_end": 293594245796729,
                            "chunk_size_gb": 5.676243627182653,
                            "chunk_start": 261168056739062,
                            "major_barcode_proportion": 0.08059701492537313
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk08",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 9,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.0811795076677218,
                            "chunk_end": 325932262092264,
                            "chunk_size_gb": 5.660787674324975,
                            "chunk_start": 293594245796729,
                            "major_barcode_proportion": 0.01966568338249754
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk09",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 10,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.0811795076677218,
                            "chunk_end": 358182333295193,
                            "chunk_size_gb": 5.645395806210495,
                            "chunk_start": 325932262092264,
                            "major_barcode_proportion": 0.0400390625
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk10",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 11,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.0811795076677218,
                            "chunk_end": 390279792852273,
                            "chunk_size_gb": 5.618685581233228,
                            "chunk_start": 358182333295193,
                            "major_barcode_proportion": 0.026418786692759294
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk11",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 12,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.0811795076677218,
                            "chunk_end": 422389188922501,
                            "chunk_size_gb": 5.62077776568771,
                            "chunk_start": 390279792852273,
                            "major_barcode_proportion": 0.05180840664711633
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk12",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 13,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.0811795076677218,
                            "chunk_end": 454503695298940,
                            "chunk_size_gb": 5.621665487374766,
                            "chunk_start": 422389188922501,
                            "major_barcode_proportion": 0.042033235581622676
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk13",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 14,
                        "chunkDef": {
                            "__mem_gb": 10,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "bam_compression_ratio": 0.0811795076677218,
                            "chunk_end": 486695339141458,
                            "chunk_size_gb": 5.635146526498507,
                            "chunk_start": 454503695298940,
                            "major_barcode_proportion": 0.07526881720430108
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk14",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 15,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.0811795076677218,
                            "chunk_end": 519172495582071,
                            "chunk_size_gb": 5.685177861807187,
                            "chunk_start": 486695339141458,
                            "major_barcode_proportion": 0.039761431411530816
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk15",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 16,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.0811795076677218,
                            "chunk_end": 551243995755333,
                            "chunk_size_gb": 5.614127476434692,
                            "chunk_start": 519172495582071,
                            "major_barcode_proportion": 0.03641732283464567
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk16",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 17,
                        "chunkDef": {
                            "__mem_gb": 10,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "bam_compression_ratio": 0.0811795076677218,
                            "chunk_end": 583731168879828,
                            "chunk_size_gb": 5.68689616123109,
                            "chunk_start": 551243995755333,
                            "major_barcode_proportion": 0.0703125
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk17",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 18,
                        "chunkDef": {
                            "__mem_gb": 10,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "bam_compression_ratio": 0.0811795076677218,
                            "chunk_end": 616364561840989,
                            "chunk_size_gb": 5.712496432949428,
                            "chunk_start": 583731168879828,
                            "major_barcode_proportion": 0.0658682634730539
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk18",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 19,
                        "chunkDef": {
                            "__mem_gb": 10,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "bam_compression_ratio": 0.0811795076677218,
                            "chunk_end": 648990890849307,
                            "chunk_size_gb": 5.711249705915275,
                            "chunk_start": 616364561840989,
                            "major_barcode_proportion": 0.05691854759568204
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk19",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 20,
                        "chunkDef": {
                            "__mem_gb": 10,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "bam_compression_ratio": 0.0811795076677218,
                            "chunk_end": 681265223843830,
                            "chunk_size_gb": 5.6496254336786995,
                            "chunk_start": 648990890849307,
                            "major_barcode_proportion": 0.07820136852394917
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk20",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 21,
                        "chunkDef": {
                            "__mem_gb": 10,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "bam_compression_ratio": 0.0811795076677218,
                            "chunk_end": 713670178525264,
                            "chunk_size_gb": 5.672503572276429,
                            "chunk_start": 681265223843830,
                            "major_barcode_proportion": 0.07917888563049853
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk21",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 22,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.0811795076677218,
                            "chunk_end": 746111573096723,
                            "chunk_size_gb": 5.678894551208914,
                            "chunk_start": 713670178525264,
                            "major_barcode_proportion": 0.04985337243401759
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk22",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 23,
                        "chunkDef": {
                            "__mem_gb": 10,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "bam_compression_ratio": 0.0811795076677218,
                            "chunk_end": 778156542968469,
                            "chunk_size_gb": 5.609491669171838,
                            "chunk_start": 746111573096723,
                            "major_barcode_proportion": 0.08113391984359726
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk23",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 24,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.0811795076677218,
                            "chunk_end": 810213664007557,
                            "chunk_size_gb": 5.6116115709087335,
                            "chunk_start": 778156542968469,
                            "major_barcode_proportion": 0.05865102639296188
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk24",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 25,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.0811795076677218,
                            "chunk_end": 842273292851381,
                            "chunk_size_gb": 5.61206252742245,
                            "chunk_start": 810213664007557,
                            "major_barcode_proportion": 0.04398826979472141
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk25",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 26,
                        "chunkDef": {
                            "__mem_gb": 10,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "bam_compression_ratio": 0.0811795076677218,
                            "chunk_end": 874380344837260,
                            "chunk_size_gb": 5.620356109645553,
                            "chunk_start": 842273292851381,
                            "major_barcode_proportion": 0.12903225806451613
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk26",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 27,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.0811795076677218,
                            "chunk_end": 906677676995952,
                            "chunk_size_gb": 5.653689124568741,
                            "chunk_start": 874380344837260,
                            "major_barcode_proportion": 0.05180840664711633
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk27",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 28,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.0811795076677218,
                            "chunk_end": 938803114937665,
                            "chunk_size_gb": 5.62357913857224,
                            "chunk_start": 906677676995952,
                            "major_barcode_proportion": 0.039100684261974585
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk28",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 29,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.0811795076677218,
                            "chunk_end": 971095206344334,
                            "chunk_size_gb": 5.652753218864244,
                            "chunk_start": 938803114937665,
                            "major_barcode_proportion": 0.05767350928641251
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk29",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 30,
                        "chunkDef": {
                            "__mem_gb": 10,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "bam_compression_ratio": 0.0811795076677218,
                            "chunk_end": 1003244438581861,
                            "chunk_size_gb": 5.6277293541907465,
                            "chunk_start": 971095206344334,
                            "major_barcode_proportion": 0.11643835616438356
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk30",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 31,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.0811795076677218,
                            "chunk_end": 1035830380470725,
                            "chunk_size_gb": 5.7041757070631665,
                            "chunk_start": 1003244438581861,
                            "major_barcode_proportion": 0.04887585532746823
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk31",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 32,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.0811795076677218,
                            "chunk_end": 1068056021533082,
                            "chunk_size_gb": 5.641112476507614,
                            "chunk_start": 1035830380470725,
                            "major_barcode_proportion": 0.03421309872922776
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk32",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 33,
                        "chunkDef": {
                            "__mem_gb": 10,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "bam_compression_ratio": 0.0811795076677218,
                            "chunk_end": 1102503005400035,
                            "chunk_size_gb": 6.02997681676013,
                            "chunk_start": 1068056021533082,
                            "major_barcode_proportion": 0.07737512242899118
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk33",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 34,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.0811795076677218,
                            "chunk_end": 1132421792352544,
                            "chunk_size_gb": 5.237298482696884,
                            "chunk_start": 1102503005400035,
                            "major_barcode_proportion": 0.028265107212475632
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk34",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 35,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.0811795076677218,
                            "chunk_end": 1164580655942768,
                            "chunk_size_gb": 5.629418720259414,
                            "chunk_start": 1132421792352544,
                            "major_barcode_proportion": 0.026392961876832845
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk35",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 36,
                        "chunkDef": {
                            "__mem_gb": 10,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "bam_compression_ratio": 0.0811795076677218,
                            "chunk_end": 1196643299449255,
                            "chunk_size_gb": 5.612591507627266,
                            "chunk_start": 1164580655942768,
                            "major_barcode_proportion": 0.0772238514173998
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk36",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 37,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.0811795076677218,
                            "chunk_end": 1229002976315789,
                            "chunk_size_gb": 5.664578070057042,
                            "chunk_start": 1196643299449255,
                            "major_barcode_proportion": 0.02991026919242273
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk37",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 38,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.0811795076677218,
                            "chunk_end": 1261169934711184,
                            "chunk_size_gb": 5.630849888828903,
                            "chunk_start": 1229002976315789,
                            "major_barcode_proportion": 0.03631010794896958
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk38",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 39,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.0811795076677218,
                            "chunk_end": 1293522366831823,
                            "chunk_size_gb": 5.66331575205153,
                            "chunk_start": 1261169934711184,
                            "major_barcode_proportion": 0.03616813294232649
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk39",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 40,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.0811795076677218,
                            "chunk_end": 1325587203670617,
                            "chunk_size_gb": 5.6129553199037225,
                            "chunk_start": 1293522366831823,
                            "major_barcode_proportion": 0.04887585532746823
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk40",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 41,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.0811795076677218,
                            "chunk_end": 1357654139929667,
                            "chunk_size_gb": 5.613330742233905,
                            "chunk_start": 1325587203670617,
                            "major_barcode_proportion": 0.0273972602739726
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk41",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 42,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.0811795076677218,
                            "chunk_end": 1389853695471792,
                            "chunk_size_gb": 5.63654862404414,
                            "chunk_start": 1357654139929667,
                            "major_barcode_proportion": 0.03714565004887586
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk42",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 43,
                        "chunkDef": {
                            "__mem_gb": 10,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "bam_compression_ratio": 0.0811795076677218,
                            "chunk_end": 1422033172022214,
                            "chunk_size_gb": 5.633040793157216,
                            "chunk_start": 1389853695471792,
                            "major_barcode_proportion": 0.14173998044965788
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk43",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 44,
                        "chunkDef": {
                            "__mem_gb": 10,
                            "__threads": 1,
                            "__vmem_gb": 13,
                            "bam_compression_ratio": 0.0811795076677218,
                            "chunk_end": 1455068584468205,
                            "chunk_size_gb": 5.78287089980868,
                            "chunk_start": 1422033172022214,
                            "major_barcode_proportion": 0.05185909980430528
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk44",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 45,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "bam_compression_ratio": 0.0811795076677218,
                            "chunk_end": 1486629509722051,
                            "chunk_size_gb": 5.524746124079998,
                            "chunk_start": 1455068584468205,
                            "major_barcode_proportion": 0.04594330400782014
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk45",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 46,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "bam_compression_ratio": 0.0811795076677218,
                            "chunk_end": null,
                            "chunk_size_gb": 0.0020938250055519353,
                            "chunk_start": 1486629509722051,
                            "major_barcode_proportion": 0.8125
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk46",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "reference_path",
                            "type": "path",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/ref/mm9/mm9_usethis",
                            "waiting": false
                        },
                        {
                            "id": "filter_umis",
                            "type": "bool",
                            "valexp": "self.filter_umis",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "filter_umis",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "library_info",
                            "type": "map",
                            "valexp": "self.library_info",
                            "mode": "reference",
                            "output": "library_info",
                            "sweep": false,
                            "sweepRootId": "library_info",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": [
                                {
                                    "gem_group": 1,
                                    "library_id": "0",
                                    "library_type": "Gene Expression"
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "input",
                            "type": "bam",
                            "valexp": "SORT_BY_BC",
                            "mode": "reference",
                            "output": "default",
                            "sweep": false,
                            "sweepRootId": "input",
                            "node": "SORT_BY_BC",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC/fork0/join-u5c5a741b04/files/default.bam",
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/lib/bin/cr_stage martian mark_duplicates"
    },
    {
        "name": "REPORT_MOLECULES",
        "fqname": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 29,
                    "__vmem_gb": 32
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk00-u5c5a741ec9/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk00",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk01-u5c5a741ec9/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk01",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk02-u5c5a741eca/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk02",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk03-u5c5a741eca/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk03",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk04-u5c5a741eca/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk04",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk05-u5c5a741eca/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk05",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk06-u5c5a741eca/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk06",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 7,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk07-u5c5a741eca/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk07",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 8,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk08-u5c5a741eca/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk08",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 9,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk09-u5c5a741eca/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk09",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 10,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk10-u5c5a741eca/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk10",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 11,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk11-u5c5a741eca/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk11",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 12,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk12-u5c5a741eca/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk12",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 13,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk13-u5c5a741eca/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk13",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 14,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk14-u5c5a741ecb/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk14",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 15,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk15-u5c5a741ecb/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk15",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 16,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk16-u5c5a741ecb/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk16",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 17,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk17-u5c5a741ecb/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk17",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 18,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk18-u5c5a741ecb/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk18",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 19,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk19-u5c5a741ecb/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk19",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 20,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk20-u5c5a741ecb/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk20",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 21,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk21-u5c5a741ecb/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk21",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 22,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk22-u5c5a741ecb/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk22",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 23,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk23-u5c5a741ecb/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk23",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 24,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk24-u5c5a741ecb/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk24",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 25,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk25-u5c5a741ecb/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk25",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 26,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk26-u5c5a741ecb/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk26",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 27,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk27-u5c5a741ecc/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk27",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 28,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk28-u5c5a741ecc/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk28",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 29,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk29-u5c5a741ecc/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk29",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 30,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk30-u5c5a741ecc/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk30",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 31,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk31-u5c5a741ecc/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk31",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 32,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk32-u5c5a741ecc/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk32",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 33,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk33-u5c5a741ecc/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk33",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 34,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk34-u5c5a741ecc/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk34",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 35,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk35-u5c5a741ecc/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk35",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 36,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk36-u5c5a741ecc/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk36",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 37,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk37-u5c5a741ecd/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk37",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 38,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk38-u5c5a741ecd/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk38",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 39,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk39-u5c5a741ecd/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk39",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 40,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk40-u5c5a741ecd/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk40",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 41,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk41-u5c5a741ecd/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk41",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 42,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk42-u5c5a741ecd/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk42",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 43,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk43-u5c5a741ecd/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk43",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 44,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk44-u5c5a741ecd/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk44",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 45,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk45-u5c5a741ecd/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk45",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 46,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk46-u5c5a741ecd/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/chnk46",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "inputs",
                            "type": "bam",
                            "valexp": "MARK_DUPLICATES.output",
                            "mode": "reference",
                            "output": "output",
                            "sweep": false,
                            "sweepRootId": "inputs",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": [
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk00-u5c5a741ec9/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk01-u5c5a741ec9/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk02-u5c5a741eca/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk03-u5c5a741eca/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk04-u5c5a741eca/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk05-u5c5a741eca/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk06-u5c5a741eca/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk07-u5c5a741eca/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk08-u5c5a741eca/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk09-u5c5a741eca/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk10-u5c5a741eca/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk11-u5c5a741eca/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk12-u5c5a741eca/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk13-u5c5a741eca/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk14-u5c5a741ecb/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk15-u5c5a741ecb/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk16-u5c5a741ecb/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk17-u5c5a741ecb/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk18-u5c5a741ecb/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk19-u5c5a741ecb/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk20-u5c5a741ecb/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk21-u5c5a741ecb/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk22-u5c5a741ecb/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk23-u5c5a741ecb/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk24-u5c5a741ecb/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk25-u5c5a741ecb/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk26-u5c5a741ecb/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk27-u5c5a741ecc/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk28-u5c5a741ecc/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk29-u5c5a741ecc/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk30-u5c5a741ecc/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk31-u5c5a741ecc/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk32-u5c5a741ecc/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk33-u5c5a741ecc/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk34-u5c5a741ecc/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk35-u5c5a741ecc/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk36-u5c5a741ecc/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk37-u5c5a741ecd/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk38-u5c5a741ecd/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk39-u5c5a741ecd/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk40-u5c5a741ecd/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk41-u5c5a741ecd/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk42-u5c5a741ecd/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk43-u5c5a741ecd/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk44-u5c5a741ecd/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk45-u5c5a741ecd/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk46-u5c5a741ecd/files/alignments.bam"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/ref/mm9/mm9_usethis",
                            "waiting": false
                        },
                        {
                            "id": "align",
                            "type": "map",
                            "valexp": "SUMMARIZE_READ_REPORTS.align",
                            "mode": "reference",
                            "output": "align",
                            "sweep": false,
                            "sweepRootId": "align",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": {
                                "aligner": "star",
                                "high_conf_mapq": 255
                            },
                            "waiting": false
                        },
                        {
                            "id": "mark_duplicates_summary",
                            "type": "json",
                            "valexp": "MARK_DUPLICATES.summary",
                            "mode": "reference",
                            "output": "summary",
                            "sweep": false,
                            "sweepRootId": "mark_duplicates_summary",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/join-u5c5a741eaf/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "recovered_cells",
                            "type": "int",
                            "valexp": "self.recovered_cells",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "recovered_cells",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "force_cells",
                            "type": "int",
                            "valexp": "self.force_cells",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "force_cells",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": 2000,
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "valexp": "self.feature_reference",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "feature_reference",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "barcode_whitelist",
                            "type": "string",
                            "valexp": "self.barcode_whitelist",
                            "mode": "reference",
                            "output": "barcode_whitelist",
                            "sweep": false,
                            "sweepRootId": "barcode_whitelist",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": "3M-february-2018",
                            "waiting": false
                        },
                        {
                            "id": "extract_reads_summary",
                            "type": "json",
                            "valexp": "SUMMARIZE_READ_REPORTS.summary",
                            "mode": "reference",
                            "output": "summary",
                            "sweep": false,
                            "sweepRootId": "extract_reads_summary",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/join-u5c5a7401e0/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "attach_bcs_and_umis_summary",
                            "type": "json",
                            "valexp": "ATTACH_BCS_AND_UMIS.summary",
                            "mode": "reference",
                            "output": "summary",
                            "sweep": false,
                            "sweepRootId": "attach_bcs_and_umis_summary",
                            "node": "ATTACH_BCS_AND_UMIS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/join-u5c5a740e02/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "filtered_barcodes",
                            "type": "csv",
                            "valexp": "FILTER_BARCODES.filtered_barcodes",
                            "mode": "reference",
                            "output": "filtered_barcodes",
                            "sweep": false,
                            "sweepRootId": "filtered_barcodes",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-u5c5a742785/files/filtered_barcodes.csv",
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/counter/report_molecules"
    },
    {
        "name": "SORT_BY_BC",
        "fqname": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "bucket": [
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u5c5a74175b/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u5c5a74175b/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u5c5a74175b/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u5c5a74175c/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u5c5a74175c/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u5c5a74175c/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u5c5a74175c/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u5c5a74175c/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u5c5a74175c/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u5c5a74175c/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u5c5a74175c/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u5c5a74175c/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u5c5a74175c/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u5c5a74175c/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u5c5a74175c/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u5c5a74175c/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u5c5a74175c/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u5c5a74175c/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u5c5a74175c/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u5c5a74175d/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u5c5a74175d/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u5c5a74175d/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u5c5a74175d/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u5c5a74175d/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u5c5a74175d/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u5c5a74175d/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u5c5a74175d/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u5c5a74175d/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u5c5a74175d/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u5c5a74175d/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u5c5a74175d/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u5c5a74175d/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u5c5a74175d/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u5c5a74175d/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u5c5a74175d/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u5c5a74175d/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u5c5a74175e/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u5c5a74175e/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u5c5a74175e/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u5c5a74175e/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u5c5a74175e/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u5c5a74175e/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u5c5a74175e/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u5c5a74175e/files/bc-CG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u5c5a74175e/files/bc-CG-1.bam"
                            ],
                            "prefix": "CG-1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC/fork0/chnk00",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "bucket": [
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u5c5a74175b/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u5c5a74175b/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u5c5a74175b/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u5c5a74175c/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u5c5a74175c/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u5c5a74175c/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u5c5a74175c/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u5c5a74175c/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u5c5a74175c/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u5c5a74175c/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u5c5a74175c/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u5c5a74175c/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u5c5a74175c/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u5c5a74175c/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u5c5a74175c/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u5c5a74175c/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u5c5a74175c/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u5c5a74175c/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u5c5a74175c/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u5c5a74175d/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u5c5a74175d/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u5c5a74175d/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u5c5a74175d/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u5c5a74175d/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u5c5a74175d/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u5c5a74175d/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u5c5a74175d/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u5c5a74175d/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u5c5a74175d/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u5c5a74175d/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u5c5a74175d/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u5c5a74175d/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u5c5a74175d/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u5c5a74175d/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u5c5a74175d/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u5c5a74175d/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u5c5a74175e/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u5c5a74175e/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u5c5a74175e/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u5c5a74175e/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u5c5a74175e/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u5c5a74175e/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u5c5a74175e/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u5c5a74175e/files/bc-TG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u5c5a74175e/files/bc-TG-1.bam"
                            ],
                            "prefix": "TG-1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC/fork0/chnk01",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "bucket": [
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u5c5a74175b/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u5c5a74175b/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u5c5a74175b/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u5c5a74175c/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u5c5a74175c/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u5c5a74175c/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u5c5a74175c/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u5c5a74175c/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u5c5a74175c/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u5c5a74175c/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u5c5a74175c/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u5c5a74175c/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u5c5a74175c/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u5c5a74175c/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u5c5a74175c/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u5c5a74175c/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u5c5a74175c/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u5c5a74175c/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u5c5a74175c/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u5c5a74175d/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u5c5a74175d/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u5c5a74175d/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u5c5a74175d/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u5c5a74175d/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u5c5a74175d/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u5c5a74175d/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u5c5a74175d/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u5c5a74175d/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u5c5a74175d/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u5c5a74175d/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u5c5a74175d/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u5c5a74175d/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u5c5a74175d/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u5c5a74175d/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u5c5a74175d/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u5c5a74175d/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u5c5a74175e/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u5c5a74175e/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u5c5a74175e/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u5c5a74175e/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u5c5a74175e/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u5c5a74175e/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u5c5a74175e/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u5c5a74175e/files/bc-CT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u5c5a74175e/files/bc-CT-1.bam"
                            ],
                            "prefix": "CT-1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC/fork0/chnk02",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "bucket": [
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u5c5a74175b/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u5c5a74175b/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u5c5a74175b/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u5c5a74175c/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u5c5a74175c/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u5c5a74175c/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u5c5a74175c/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u5c5a74175c/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u5c5a74175c/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u5c5a74175c/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u5c5a74175c/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u5c5a74175c/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u5c5a74175c/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u5c5a74175c/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u5c5a74175c/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u5c5a74175c/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u5c5a74175c/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u5c5a74175c/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u5c5a74175c/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u5c5a74175d/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u5c5a74175d/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u5c5a74175d/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u5c5a74175d/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u5c5a74175d/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u5c5a74175d/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u5c5a74175d/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u5c5a74175d/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u5c5a74175d/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u5c5a74175d/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u5c5a74175d/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u5c5a74175d/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u5c5a74175d/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u5c5a74175d/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u5c5a74175d/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u5c5a74175d/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u5c5a74175d/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u5c5a74175e/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u5c5a74175e/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u5c5a74175e/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u5c5a74175e/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u5c5a74175e/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u5c5a74175e/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u5c5a74175e/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u5c5a74175e/files/bc-GG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u5c5a74175e/files/bc-GG-1.bam"
                            ],
                            "prefix": "GG-1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC/fork0/chnk03",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "bucket": [
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u5c5a74175b/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u5c5a74175b/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u5c5a74175b/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u5c5a74175c/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u5c5a74175c/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u5c5a74175c/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u5c5a74175c/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u5c5a74175c/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u5c5a74175c/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u5c5a74175c/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u5c5a74175c/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u5c5a74175c/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u5c5a74175c/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u5c5a74175c/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u5c5a74175c/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u5c5a74175c/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u5c5a74175c/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u5c5a74175c/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u5c5a74175c/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u5c5a74175d/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u5c5a74175d/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u5c5a74175d/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u5c5a74175d/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u5c5a74175d/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u5c5a74175d/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u5c5a74175d/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u5c5a74175d/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u5c5a74175d/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u5c5a74175d/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u5c5a74175d/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u5c5a74175d/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u5c5a74175d/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u5c5a74175d/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u5c5a74175d/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u5c5a74175d/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u5c5a74175d/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u5c5a74175e/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u5c5a74175e/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u5c5a74175e/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u5c5a74175e/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u5c5a74175e/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u5c5a74175e/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u5c5a74175e/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u5c5a74175e/files/bc-TC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u5c5a74175e/files/bc-TC-1.bam"
                            ],
                            "prefix": "TC-1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC/fork0/chnk04",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "bucket": [
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u5c5a74175b/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u5c5a74175b/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u5c5a74175b/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u5c5a74175c/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u5c5a74175c/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u5c5a74175c/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u5c5a74175c/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u5c5a74175c/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u5c5a74175c/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u5c5a74175c/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u5c5a74175c/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u5c5a74175c/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u5c5a74175c/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u5c5a74175c/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u5c5a74175c/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u5c5a74175c/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u5c5a74175c/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u5c5a74175c/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u5c5a74175c/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u5c5a74175d/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u5c5a74175d/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u5c5a74175d/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u5c5a74175d/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u5c5a74175d/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u5c5a74175d/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u5c5a74175d/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u5c5a74175d/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u5c5a74175d/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u5c5a74175d/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u5c5a74175d/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u5c5a74175d/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u5c5a74175d/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u5c5a74175d/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u5c5a74175d/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u5c5a74175d/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u5c5a74175d/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u5c5a74175e/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u5c5a74175e/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u5c5a74175e/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u5c5a74175e/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u5c5a74175e/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u5c5a74175e/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u5c5a74175e/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u5c5a74175e/files/bc-GA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u5c5a74175e/files/bc-GA-1.bam"
                            ],
                            "prefix": "GA-1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC/fork0/chnk05",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "bucket": [
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u5c5a74175b/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u5c5a74175b/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u5c5a74175b/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u5c5a74175c/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u5c5a74175c/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u5c5a74175c/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u5c5a74175c/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u5c5a74175c/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u5c5a74175c/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u5c5a74175c/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u5c5a74175c/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u5c5a74175c/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u5c5a74175c/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u5c5a74175c/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u5c5a74175c/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u5c5a74175c/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u5c5a74175c/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u5c5a74175c/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u5c5a74175c/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u5c5a74175d/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u5c5a74175d/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u5c5a74175d/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u5c5a74175d/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u5c5a74175d/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u5c5a74175d/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u5c5a74175d/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u5c5a74175d/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u5c5a74175d/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u5c5a74175d/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u5c5a74175d/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u5c5a74175d/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u5c5a74175d/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u5c5a74175d/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u5c5a74175d/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u5c5a74175d/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u5c5a74175d/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u5c5a74175e/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u5c5a74175e/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u5c5a74175e/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u5c5a74175e/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u5c5a74175e/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u5c5a74175e/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u5c5a74175e/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u5c5a74175e/files/bc-CA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u5c5a74175e/files/bc-CA-1.bam"
                            ],
                            "prefix": "CA-1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC/fork0/chnk06",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 7,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "bucket": [
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u5c5a74175b/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u5c5a74175b/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u5c5a74175b/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u5c5a74175c/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u5c5a74175c/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u5c5a74175c/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u5c5a74175c/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u5c5a74175c/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u5c5a74175c/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u5c5a74175c/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u5c5a74175c/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u5c5a74175c/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u5c5a74175c/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u5c5a74175c/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u5c5a74175c/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u5c5a74175c/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u5c5a74175c/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u5c5a74175c/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u5c5a74175c/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u5c5a74175d/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u5c5a74175d/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u5c5a74175d/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u5c5a74175d/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u5c5a74175d/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u5c5a74175d/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u5c5a74175d/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u5c5a74175d/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u5c5a74175d/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u5c5a74175d/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u5c5a74175d/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u5c5a74175d/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u5c5a74175d/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u5c5a74175d/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u5c5a74175d/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u5c5a74175d/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u5c5a74175d/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u5c5a74175e/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u5c5a74175e/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u5c5a74175e/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u5c5a74175e/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u5c5a74175e/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u5c5a74175e/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u5c5a74175e/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u5c5a74175e/files/bc-CC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u5c5a74175e/files/bc-CC-1.bam"
                            ],
                            "prefix": "CC-1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC/fork0/chnk07",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 8,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "bucket": [
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u5c5a74175b/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u5c5a74175b/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u5c5a74175b/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u5c5a74175c/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u5c5a74175c/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u5c5a74175c/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u5c5a74175c/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u5c5a74175c/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u5c5a74175c/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u5c5a74175c/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u5c5a74175c/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u5c5a74175c/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u5c5a74175c/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u5c5a74175c/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u5c5a74175c/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u5c5a74175c/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u5c5a74175c/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u5c5a74175c/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u5c5a74175c/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u5c5a74175d/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u5c5a74175d/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u5c5a74175d/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u5c5a74175d/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u5c5a74175d/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u5c5a74175d/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u5c5a74175d/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u5c5a74175d/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u5c5a74175d/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u5c5a74175d/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u5c5a74175d/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u5c5a74175d/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u5c5a74175d/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u5c5a74175d/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u5c5a74175d/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u5c5a74175d/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u5c5a74175d/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u5c5a74175e/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u5c5a74175e/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u5c5a74175e/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u5c5a74175e/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u5c5a74175e/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u5c5a74175e/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u5c5a74175e/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u5c5a74175e/files/bc-AT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u5c5a74175e/files/bc-AT-1.bam"
                            ],
                            "prefix": "AT-1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC/fork0/chnk08",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 9,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "bucket": [
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u5c5a74175b/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u5c5a74175b/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u5c5a74175b/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u5c5a74175c/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u5c5a74175c/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u5c5a74175c/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u5c5a74175c/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u5c5a74175c/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u5c5a74175c/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u5c5a74175c/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u5c5a74175c/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u5c5a74175c/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u5c5a74175c/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u5c5a74175c/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u5c5a74175c/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u5c5a74175c/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u5c5a74175c/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u5c5a74175c/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u5c5a74175c/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u5c5a74175d/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u5c5a74175d/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u5c5a74175d/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u5c5a74175d/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u5c5a74175d/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u5c5a74175d/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u5c5a74175d/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u5c5a74175d/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u5c5a74175d/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u5c5a74175d/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u5c5a74175d/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u5c5a74175d/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u5c5a74175d/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u5c5a74175d/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u5c5a74175d/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u5c5a74175d/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u5c5a74175d/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u5c5a74175e/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u5c5a74175e/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u5c5a74175e/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u5c5a74175e/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u5c5a74175e/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u5c5a74175e/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u5c5a74175e/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u5c5a74175e/files/bc-GT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u5c5a74175e/files/bc-GT-1.bam"
                            ],
                            "prefix": "GT-1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC/fork0/chnk09",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 10,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "bucket": [
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u5c5a74175b/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u5c5a74175b/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u5c5a74175b/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u5c5a74175c/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u5c5a74175c/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u5c5a74175c/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u5c5a74175c/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u5c5a74175c/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u5c5a74175c/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u5c5a74175c/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u5c5a74175c/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u5c5a74175c/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u5c5a74175c/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u5c5a74175c/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u5c5a74175c/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u5c5a74175c/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u5c5a74175c/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u5c5a74175c/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u5c5a74175c/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u5c5a74175d/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u5c5a74175d/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u5c5a74175d/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u5c5a74175d/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u5c5a74175d/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u5c5a74175d/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u5c5a74175d/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u5c5a74175d/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u5c5a74175d/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u5c5a74175d/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u5c5a74175d/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u5c5a74175d/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u5c5a74175d/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u5c5a74175d/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u5c5a74175d/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u5c5a74175d/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u5c5a74175d/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u5c5a74175e/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u5c5a74175e/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u5c5a74175e/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u5c5a74175e/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u5c5a74175e/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u5c5a74175e/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u5c5a74175e/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u5c5a74175e/files/bc-AC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u5c5a74175e/files/bc-AC-1.bam"
                            ],
                            "prefix": "AC-1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC/fork0/chnk10",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 11,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "bucket": [
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u5c5a74175b/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u5c5a74175b/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u5c5a74175b/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u5c5a74175c/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u5c5a74175c/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u5c5a74175c/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u5c5a74175c/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u5c5a74175c/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u5c5a74175c/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u5c5a74175c/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u5c5a74175c/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u5c5a74175c/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u5c5a74175c/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u5c5a74175c/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u5c5a74175c/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u5c5a74175c/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u5c5a74175c/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u5c5a74175c/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u5c5a74175c/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u5c5a74175d/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u5c5a74175d/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u5c5a74175d/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u5c5a74175d/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u5c5a74175d/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u5c5a74175d/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u5c5a74175d/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u5c5a74175d/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u5c5a74175d/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u5c5a74175d/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u5c5a74175d/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u5c5a74175d/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u5c5a74175d/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u5c5a74175d/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u5c5a74175d/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u5c5a74175d/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u5c5a74175d/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u5c5a74175e/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u5c5a74175e/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u5c5a74175e/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u5c5a74175e/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u5c5a74175e/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u5c5a74175e/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u5c5a74175e/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u5c5a74175e/files/bc-AA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u5c5a74175e/files/bc-AA-1.bam"
                            ],
                            "prefix": "AA-1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC/fork0/chnk11",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 12,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "bucket": [
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u5c5a74175b/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u5c5a74175b/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u5c5a74175b/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u5c5a74175c/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u5c5a74175c/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u5c5a74175c/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u5c5a74175c/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u5c5a74175c/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u5c5a74175c/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u5c5a74175c/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u5c5a74175c/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u5c5a74175c/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u5c5a74175c/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u5c5a74175c/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u5c5a74175c/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u5c5a74175c/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u5c5a74175c/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u5c5a74175c/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u5c5a74175c/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u5c5a74175d/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u5c5a74175d/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u5c5a74175d/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u5c5a74175d/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u5c5a74175d/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u5c5a74175d/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u5c5a74175d/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u5c5a74175d/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u5c5a74175d/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u5c5a74175d/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u5c5a74175d/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u5c5a74175d/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u5c5a74175d/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u5c5a74175d/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u5c5a74175d/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u5c5a74175d/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u5c5a74175d/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u5c5a74175e/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u5c5a74175e/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u5c5a74175e/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u5c5a74175e/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u5c5a74175e/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u5c5a74175e/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u5c5a74175e/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u5c5a74175e/files/bc-AG-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u5c5a74175e/files/bc-AG-1.bam"
                            ],
                            "prefix": "AG-1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC/fork0/chnk12",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 13,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "bucket": [
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u5c5a74175b/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u5c5a74175b/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u5c5a74175b/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u5c5a74175c/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u5c5a74175c/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u5c5a74175c/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u5c5a74175c/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u5c5a74175c/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u5c5a74175c/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u5c5a74175c/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u5c5a74175c/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u5c5a74175c/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u5c5a74175c/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u5c5a74175c/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u5c5a74175c/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u5c5a74175c/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u5c5a74175c/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u5c5a74175c/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u5c5a74175c/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u5c5a74175d/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u5c5a74175d/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u5c5a74175d/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u5c5a74175d/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u5c5a74175d/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u5c5a74175d/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u5c5a74175d/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u5c5a74175d/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u5c5a74175d/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u5c5a74175d/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u5c5a74175d/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u5c5a74175d/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u5c5a74175d/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u5c5a74175d/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u5c5a74175d/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u5c5a74175d/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u5c5a74175d/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u5c5a74175e/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u5c5a74175e/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u5c5a74175e/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u5c5a74175e/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u5c5a74175e/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u5c5a74175e/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u5c5a74175e/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u5c5a74175e/files/bc-GC-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u5c5a74175e/files/bc-GC-1.bam"
                            ],
                            "prefix": "GC-1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC/fork0/chnk13",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 14,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "bucket": [
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u5c5a74175b/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u5c5a74175b/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u5c5a74175b/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u5c5a74175c/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u5c5a74175c/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u5c5a74175c/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u5c5a74175c/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u5c5a74175c/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u5c5a74175c/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u5c5a74175c/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u5c5a74175c/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u5c5a74175c/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u5c5a74175c/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u5c5a74175c/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u5c5a74175c/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u5c5a74175c/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u5c5a74175c/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u5c5a74175c/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u5c5a74175c/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u5c5a74175d/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u5c5a74175d/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u5c5a74175d/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u5c5a74175d/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u5c5a74175d/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u5c5a74175d/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u5c5a74175d/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u5c5a74175d/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u5c5a74175d/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u5c5a74175d/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u5c5a74175d/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u5c5a74175d/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u5c5a74175d/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u5c5a74175d/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u5c5a74175d/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u5c5a74175d/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u5c5a74175d/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u5c5a74175e/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u5c5a74175e/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u5c5a74175e/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u5c5a74175e/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u5c5a74175e/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u5c5a74175e/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u5c5a74175e/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u5c5a74175e/files/bc-TA-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u5c5a74175e/files/bc-TA-1.bam"
                            ],
                            "prefix": "TA-1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC/fork0/chnk14",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 15,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "bucket": [
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u5c5a74175b/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u5c5a74175b/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u5c5a74175b/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u5c5a74175c/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u5c5a74175c/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u5c5a74175c/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u5c5a74175c/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u5c5a74175c/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u5c5a74175c/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u5c5a74175c/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u5c5a74175c/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u5c5a74175c/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u5c5a74175c/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u5c5a74175c/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u5c5a74175c/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u5c5a74175c/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u5c5a74175c/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u5c5a74175c/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u5c5a74175c/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u5c5a74175d/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u5c5a74175d/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u5c5a74175d/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u5c5a74175d/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u5c5a74175d/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u5c5a74175d/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u5c5a74175d/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u5c5a74175d/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u5c5a74175d/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u5c5a74175d/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u5c5a74175d/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u5c5a74175d/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u5c5a74175d/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u5c5a74175d/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u5c5a74175d/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u5c5a74175d/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u5c5a74175d/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u5c5a74175e/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u5c5a74175e/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u5c5a74175e/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u5c5a74175e/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u5c5a74175e/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u5c5a74175e/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u5c5a74175e/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u5c5a74175e/files/bc-TT-1.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u5c5a74175e/files/bc-TT-1.bam"
                            ],
                            "prefix": "TT-1"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC/fork0/chnk15",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 16,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "bucket": [
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u5c5a74175b/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u5c5a74175b/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u5c5a74175b/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u5c5a74175c/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u5c5a74175c/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u5c5a74175c/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u5c5a74175c/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u5c5a74175c/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u5c5a74175c/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u5c5a74175c/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u5c5a74175c/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u5c5a74175c/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u5c5a74175c/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u5c5a74175c/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u5c5a74175c/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u5c5a74175c/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u5c5a74175c/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u5c5a74175c/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u5c5a74175c/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u5c5a74175d/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u5c5a74175d/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u5c5a74175d/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u5c5a74175d/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u5c5a74175d/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u5c5a74175d/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u5c5a74175d/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u5c5a74175d/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u5c5a74175d/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u5c5a74175d/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u5c5a74175d/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u5c5a74175d/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u5c5a74175d/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u5c5a74175d/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u5c5a74175d/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u5c5a74175d/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u5c5a74175d/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u5c5a74175e/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u5c5a74175e/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u5c5a74175e/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u5c5a74175e/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u5c5a74175e/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u5c5a74175e/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u5c5a74175e/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u5c5a74175e/files/bc-.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u5c5a74175e/files/bc-.bam"
                            ],
                            "prefix": ""
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_BC/fork0/chnk16",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "buckets",
                            "type": "map",
                            "valexp": "BUCKET_BY_BC.buckets",
                            "mode": "reference",
                            "output": "buckets",
                            "sweep": false,
                            "sweepRootId": "buckets",
                            "node": "BUCKET_BY_BC",
                            "matchedFork": 0,
                            "value": {
                                "CG-1": [
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u5c5a74175b/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u5c5a74175b/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u5c5a74175b/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u5c5a74175c/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u5c5a74175c/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u5c5a74175c/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u5c5a74175c/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u5c5a74175c/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u5c5a74175c/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u5c5a74175c/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u5c5a74175c/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u5c5a74175c/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u5c5a74175c/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u5c5a74175c/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u5c5a74175c/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u5c5a74175c/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u5c5a74175c/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u5c5a74175c/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u5c5a74175c/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u5c5a74175d/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u5c5a74175d/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u5c5a74175d/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u5c5a74175d/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u5c5a74175d/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u5c5a74175d/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u5c5a74175d/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u5c5a74175d/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u5c5a74175d/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u5c5a74175d/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u5c5a74175d/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u5c5a74175d/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u5c5a74175d/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u5c5a74175d/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u5c5a74175d/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u5c5a74175d/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u5c5a74175d/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u5c5a74175e/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u5c5a74175e/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u5c5a74175e/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u5c5a74175e/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u5c5a74175e/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u5c5a74175e/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u5c5a74175e/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u5c5a74175e/files/bc-CG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u5c5a74175e/files/bc-CG-1.bam"
                                ],
                                "TG-1": [
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u5c5a74175b/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u5c5a74175b/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u5c5a74175b/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u5c5a74175c/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u5c5a74175c/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u5c5a74175c/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u5c5a74175c/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u5c5a74175c/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u5c5a74175c/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u5c5a74175c/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u5c5a74175c/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u5c5a74175c/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u5c5a74175c/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u5c5a74175c/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u5c5a74175c/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u5c5a74175c/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u5c5a74175c/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u5c5a74175c/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u5c5a74175c/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u5c5a74175d/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u5c5a74175d/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u5c5a74175d/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u5c5a74175d/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u5c5a74175d/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u5c5a74175d/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u5c5a74175d/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u5c5a74175d/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u5c5a74175d/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u5c5a74175d/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u5c5a74175d/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u5c5a74175d/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u5c5a74175d/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u5c5a74175d/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u5c5a74175d/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u5c5a74175d/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u5c5a74175d/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u5c5a74175e/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u5c5a74175e/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u5c5a74175e/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u5c5a74175e/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u5c5a74175e/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u5c5a74175e/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u5c5a74175e/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u5c5a74175e/files/bc-TG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u5c5a74175e/files/bc-TG-1.bam"
                                ],
                                "TA-1": [
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u5c5a74175b/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u5c5a74175b/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u5c5a74175b/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u5c5a74175c/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u5c5a74175c/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u5c5a74175c/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u5c5a74175c/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u5c5a74175c/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u5c5a74175c/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u5c5a74175c/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u5c5a74175c/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u5c5a74175c/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u5c5a74175c/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u5c5a74175c/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u5c5a74175c/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u5c5a74175c/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u5c5a74175c/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u5c5a74175c/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u5c5a74175c/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u5c5a74175d/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u5c5a74175d/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u5c5a74175d/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u5c5a74175d/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u5c5a74175d/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u5c5a74175d/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u5c5a74175d/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u5c5a74175d/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u5c5a74175d/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u5c5a74175d/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u5c5a74175d/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u5c5a74175d/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u5c5a74175d/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u5c5a74175d/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u5c5a74175d/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u5c5a74175d/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u5c5a74175d/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u5c5a74175e/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u5c5a74175e/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u5c5a74175e/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u5c5a74175e/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u5c5a74175e/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u5c5a74175e/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u5c5a74175e/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u5c5a74175e/files/bc-TA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u5c5a74175e/files/bc-TA-1.bam"
                                ],
                                "GG-1": [
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u5c5a74175b/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u5c5a74175b/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u5c5a74175b/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u5c5a74175c/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u5c5a74175c/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u5c5a74175c/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u5c5a74175c/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u5c5a74175c/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u5c5a74175c/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u5c5a74175c/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u5c5a74175c/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u5c5a74175c/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u5c5a74175c/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u5c5a74175c/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u5c5a74175c/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u5c5a74175c/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u5c5a74175c/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u5c5a74175c/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u5c5a74175c/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u5c5a74175d/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u5c5a74175d/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u5c5a74175d/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u5c5a74175d/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u5c5a74175d/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u5c5a74175d/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u5c5a74175d/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u5c5a74175d/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u5c5a74175d/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u5c5a74175d/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u5c5a74175d/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u5c5a74175d/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u5c5a74175d/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u5c5a74175d/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u5c5a74175d/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u5c5a74175d/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u5c5a74175d/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u5c5a74175e/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u5c5a74175e/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u5c5a74175e/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u5c5a74175e/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u5c5a74175e/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u5c5a74175e/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u5c5a74175e/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u5c5a74175e/files/bc-GG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u5c5a74175e/files/bc-GG-1.bam"
                                ],
                                "TC-1": [
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u5c5a74175b/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u5c5a74175b/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u5c5a74175b/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u5c5a74175c/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u5c5a74175c/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u5c5a74175c/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u5c5a74175c/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u5c5a74175c/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u5c5a74175c/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u5c5a74175c/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u5c5a74175c/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u5c5a74175c/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u5c5a74175c/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u5c5a74175c/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u5c5a74175c/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u5c5a74175c/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u5c5a74175c/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u5c5a74175c/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u5c5a74175c/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u5c5a74175d/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u5c5a74175d/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u5c5a74175d/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u5c5a74175d/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u5c5a74175d/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u5c5a74175d/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u5c5a74175d/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u5c5a74175d/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u5c5a74175d/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u5c5a74175d/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u5c5a74175d/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u5c5a74175d/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u5c5a74175d/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u5c5a74175d/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u5c5a74175d/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u5c5a74175d/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u5c5a74175d/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u5c5a74175e/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u5c5a74175e/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u5c5a74175e/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u5c5a74175e/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u5c5a74175e/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u5c5a74175e/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u5c5a74175e/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u5c5a74175e/files/bc-TC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u5c5a74175e/files/bc-TC-1.bam"
                                ],
                                "GA-1": [
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u5c5a74175b/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u5c5a74175b/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u5c5a74175b/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u5c5a74175c/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u5c5a74175c/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u5c5a74175c/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u5c5a74175c/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u5c5a74175c/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u5c5a74175c/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u5c5a74175c/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u5c5a74175c/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u5c5a74175c/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u5c5a74175c/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u5c5a74175c/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u5c5a74175c/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u5c5a74175c/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u5c5a74175c/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u5c5a74175c/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u5c5a74175c/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u5c5a74175d/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u5c5a74175d/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u5c5a74175d/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u5c5a74175d/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u5c5a74175d/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u5c5a74175d/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u5c5a74175d/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u5c5a74175d/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u5c5a74175d/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u5c5a74175d/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u5c5a74175d/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u5c5a74175d/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u5c5a74175d/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u5c5a74175d/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u5c5a74175d/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u5c5a74175d/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u5c5a74175d/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u5c5a74175e/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u5c5a74175e/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u5c5a74175e/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u5c5a74175e/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u5c5a74175e/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u5c5a74175e/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u5c5a74175e/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u5c5a74175e/files/bc-GA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u5c5a74175e/files/bc-GA-1.bam"
                                ],
                                "CA-1": [
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u5c5a74175b/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u5c5a74175b/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u5c5a74175b/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u5c5a74175c/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u5c5a74175c/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u5c5a74175c/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u5c5a74175c/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u5c5a74175c/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u5c5a74175c/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u5c5a74175c/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u5c5a74175c/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u5c5a74175c/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u5c5a74175c/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u5c5a74175c/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u5c5a74175c/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u5c5a74175c/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u5c5a74175c/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u5c5a74175c/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u5c5a74175c/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u5c5a74175d/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u5c5a74175d/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u5c5a74175d/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u5c5a74175d/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u5c5a74175d/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u5c5a74175d/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u5c5a74175d/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u5c5a74175d/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u5c5a74175d/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u5c5a74175d/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u5c5a74175d/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u5c5a74175d/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u5c5a74175d/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u5c5a74175d/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u5c5a74175d/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u5c5a74175d/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u5c5a74175d/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u5c5a74175e/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u5c5a74175e/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u5c5a74175e/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u5c5a74175e/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u5c5a74175e/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u5c5a74175e/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u5c5a74175e/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u5c5a74175e/files/bc-CA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u5c5a74175e/files/bc-CA-1.bam"
                                ],
                                "CC-1": [
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u5c5a74175b/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u5c5a74175b/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u5c5a74175b/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u5c5a74175c/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u5c5a74175c/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u5c5a74175c/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u5c5a74175c/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u5c5a74175c/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u5c5a74175c/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u5c5a74175c/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u5c5a74175c/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u5c5a74175c/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u5c5a74175c/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u5c5a74175c/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u5c5a74175c/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u5c5a74175c/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u5c5a74175c/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u5c5a74175c/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u5c5a74175c/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u5c5a74175d/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u5c5a74175d/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u5c5a74175d/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u5c5a74175d/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u5c5a74175d/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u5c5a74175d/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u5c5a74175d/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u5c5a74175d/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u5c5a74175d/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u5c5a74175d/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u5c5a74175d/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u5c5a74175d/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u5c5a74175d/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u5c5a74175d/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u5c5a74175d/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u5c5a74175d/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u5c5a74175d/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u5c5a74175e/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u5c5a74175e/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u5c5a74175e/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u5c5a74175e/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u5c5a74175e/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u5c5a74175e/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u5c5a74175e/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u5c5a74175e/files/bc-CC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u5c5a74175e/files/bc-CC-1.bam"
                                ],
                                "AT-1": [
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u5c5a74175b/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u5c5a74175b/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u5c5a74175b/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u5c5a74175c/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u5c5a74175c/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u5c5a74175c/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u5c5a74175c/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u5c5a74175c/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u5c5a74175c/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u5c5a74175c/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u5c5a74175c/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u5c5a74175c/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u5c5a74175c/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u5c5a74175c/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u5c5a74175c/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u5c5a74175c/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u5c5a74175c/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u5c5a74175c/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u5c5a74175c/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u5c5a74175d/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u5c5a74175d/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u5c5a74175d/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u5c5a74175d/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u5c5a74175d/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u5c5a74175d/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u5c5a74175d/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u5c5a74175d/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u5c5a74175d/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u5c5a74175d/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u5c5a74175d/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u5c5a74175d/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u5c5a74175d/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u5c5a74175d/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u5c5a74175d/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u5c5a74175d/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u5c5a74175d/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u5c5a74175e/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u5c5a74175e/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u5c5a74175e/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u5c5a74175e/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u5c5a74175e/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u5c5a74175e/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u5c5a74175e/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u5c5a74175e/files/bc-AT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u5c5a74175e/files/bc-AT-1.bam"
                                ],
                                "AC-1": [
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u5c5a74175b/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u5c5a74175b/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u5c5a74175b/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u5c5a74175c/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u5c5a74175c/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u5c5a74175c/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u5c5a74175c/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u5c5a74175c/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u5c5a74175c/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u5c5a74175c/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u5c5a74175c/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u5c5a74175c/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u5c5a74175c/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u5c5a74175c/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u5c5a74175c/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u5c5a74175c/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u5c5a74175c/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u5c5a74175c/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u5c5a74175c/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u5c5a74175d/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u5c5a74175d/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u5c5a74175d/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u5c5a74175d/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u5c5a74175d/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u5c5a74175d/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u5c5a74175d/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u5c5a74175d/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u5c5a74175d/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u5c5a74175d/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u5c5a74175d/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u5c5a74175d/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u5c5a74175d/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u5c5a74175d/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u5c5a74175d/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u5c5a74175d/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u5c5a74175d/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u5c5a74175e/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u5c5a74175e/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u5c5a74175e/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u5c5a74175e/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u5c5a74175e/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u5c5a74175e/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u5c5a74175e/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u5c5a74175e/files/bc-AC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u5c5a74175e/files/bc-AC-1.bam"
                                ],
                                "AA-1": [
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u5c5a74175b/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u5c5a74175b/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u5c5a74175b/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u5c5a74175c/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u5c5a74175c/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u5c5a74175c/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u5c5a74175c/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u5c5a74175c/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u5c5a74175c/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u5c5a74175c/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u5c5a74175c/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u5c5a74175c/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u5c5a74175c/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u5c5a74175c/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u5c5a74175c/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u5c5a74175c/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u5c5a74175c/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u5c5a74175c/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u5c5a74175c/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u5c5a74175d/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u5c5a74175d/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u5c5a74175d/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u5c5a74175d/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u5c5a74175d/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u5c5a74175d/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u5c5a74175d/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u5c5a74175d/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u5c5a74175d/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u5c5a74175d/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u5c5a74175d/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u5c5a74175d/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u5c5a74175d/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u5c5a74175d/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u5c5a74175d/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u5c5a74175d/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u5c5a74175d/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u5c5a74175e/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u5c5a74175e/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u5c5a74175e/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u5c5a74175e/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u5c5a74175e/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u5c5a74175e/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u5c5a74175e/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u5c5a74175e/files/bc-AA-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u5c5a74175e/files/bc-AA-1.bam"
                                ],
                                "AG-1": [
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u5c5a74175b/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u5c5a74175b/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u5c5a74175b/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u5c5a74175c/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u5c5a74175c/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u5c5a74175c/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u5c5a74175c/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u5c5a74175c/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u5c5a74175c/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u5c5a74175c/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u5c5a74175c/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u5c5a74175c/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u5c5a74175c/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u5c5a74175c/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u5c5a74175c/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u5c5a74175c/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u5c5a74175c/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u5c5a74175c/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u5c5a74175c/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u5c5a74175d/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u5c5a74175d/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u5c5a74175d/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u5c5a74175d/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u5c5a74175d/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u5c5a74175d/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u5c5a74175d/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u5c5a74175d/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u5c5a74175d/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u5c5a74175d/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u5c5a74175d/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u5c5a74175d/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u5c5a74175d/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u5c5a74175d/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u5c5a74175d/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u5c5a74175d/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u5c5a74175d/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u5c5a74175e/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u5c5a74175e/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u5c5a74175e/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u5c5a74175e/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u5c5a74175e/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u5c5a74175e/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u5c5a74175e/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u5c5a74175e/files/bc-AG-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u5c5a74175e/files/bc-AG-1.bam"
                                ],
                                "GC-1": [
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u5c5a74175b/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u5c5a74175b/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u5c5a74175b/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u5c5a74175c/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u5c5a74175c/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u5c5a74175c/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u5c5a74175c/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u5c5a74175c/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u5c5a74175c/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u5c5a74175c/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u5c5a74175c/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u5c5a74175c/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u5c5a74175c/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u5c5a74175c/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u5c5a74175c/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u5c5a74175c/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u5c5a74175c/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u5c5a74175c/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u5c5a74175c/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u5c5a74175d/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u5c5a74175d/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u5c5a74175d/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u5c5a74175d/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u5c5a74175d/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u5c5a74175d/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u5c5a74175d/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u5c5a74175d/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u5c5a74175d/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u5c5a74175d/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u5c5a74175d/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u5c5a74175d/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u5c5a74175d/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u5c5a74175d/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u5c5a74175d/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u5c5a74175d/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u5c5a74175d/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u5c5a74175e/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u5c5a74175e/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u5c5a74175e/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u5c5a74175e/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u5c5a74175e/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u5c5a74175e/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u5c5a74175e/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u5c5a74175e/files/bc-GC-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u5c5a74175e/files/bc-GC-1.bam"
                                ],
                                "CT-1": [
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u5c5a74175b/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u5c5a74175b/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u5c5a74175b/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u5c5a74175c/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u5c5a74175c/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u5c5a74175c/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u5c5a74175c/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u5c5a74175c/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u5c5a74175c/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u5c5a74175c/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u5c5a74175c/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u5c5a74175c/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u5c5a74175c/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u5c5a74175c/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u5c5a74175c/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u5c5a74175c/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u5c5a74175c/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u5c5a74175c/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u5c5a74175c/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u5c5a74175d/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u5c5a74175d/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u5c5a74175d/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u5c5a74175d/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u5c5a74175d/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u5c5a74175d/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u5c5a74175d/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u5c5a74175d/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u5c5a74175d/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u5c5a74175d/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u5c5a74175d/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u5c5a74175d/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u5c5a74175d/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u5c5a74175d/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u5c5a74175d/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u5c5a74175d/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u5c5a74175d/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u5c5a74175e/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u5c5a74175e/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u5c5a74175e/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u5c5a74175e/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u5c5a74175e/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u5c5a74175e/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u5c5a74175e/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u5c5a74175e/files/bc-CT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u5c5a74175e/files/bc-CT-1.bam"
                                ],
                                "": [
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u5c5a74175b/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u5c5a74175b/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u5c5a74175b/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u5c5a74175c/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u5c5a74175c/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u5c5a74175c/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u5c5a74175c/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u5c5a74175c/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u5c5a74175c/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u5c5a74175c/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u5c5a74175c/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u5c5a74175c/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u5c5a74175c/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u5c5a74175c/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u5c5a74175c/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u5c5a74175c/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u5c5a74175c/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u5c5a74175c/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u5c5a74175c/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u5c5a74175d/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u5c5a74175d/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u5c5a74175d/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u5c5a74175d/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u5c5a74175d/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u5c5a74175d/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u5c5a74175d/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u5c5a74175d/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u5c5a74175d/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u5c5a74175d/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u5c5a74175d/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u5c5a74175d/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u5c5a74175d/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u5c5a74175d/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u5c5a74175d/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u5c5a74175d/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u5c5a74175d/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u5c5a74175e/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u5c5a74175e/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u5c5a74175e/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u5c5a74175e/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u5c5a74175e/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u5c5a74175e/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u5c5a74175e/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u5c5a74175e/files/bc-.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u5c5a74175e/files/bc-.bam"
                                ],
                                "TT-1": [
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u5c5a74175b/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u5c5a74175b/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u5c5a74175b/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u5c5a74175c/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u5c5a74175c/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u5c5a74175c/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u5c5a74175c/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u5c5a74175c/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u5c5a74175c/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u5c5a74175c/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u5c5a74175c/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u5c5a74175c/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u5c5a74175c/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u5c5a74175c/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u5c5a74175c/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u5c5a74175c/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u5c5a74175c/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u5c5a74175c/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u5c5a74175c/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u5c5a74175d/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u5c5a74175d/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u5c5a74175d/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u5c5a74175d/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u5c5a74175d/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u5c5a74175d/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u5c5a74175d/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u5c5a74175d/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u5c5a74175d/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u5c5a74175d/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u5c5a74175d/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u5c5a74175d/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u5c5a74175d/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u5c5a74175d/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u5c5a74175d/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u5c5a74175d/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u5c5a74175d/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u5c5a74175e/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u5c5a74175e/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u5c5a74175e/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u5c5a74175e/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u5c5a74175e/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u5c5a74175e/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u5c5a74175e/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u5c5a74175e/files/bc-TT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u5c5a74175e/files/bc-TT-1.bam"
                                ],
                                "GT-1": [
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk00-u5c5a74175b/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk01-u5c5a74175b/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk02-u5c5a74175b/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk03-u5c5a74175c/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk04-u5c5a74175c/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk05-u5c5a74175c/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk06-u5c5a74175c/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk07-u5c5a74175c/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk08-u5c5a74175c/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk09-u5c5a74175c/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk10-u5c5a74175c/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk11-u5c5a74175c/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk12-u5c5a74175c/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk13-u5c5a74175c/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk14-u5c5a74175c/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk15-u5c5a74175c/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk16-u5c5a74175c/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk17-u5c5a74175c/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk18-u5c5a74175c/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk19-u5c5a74175d/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk20-u5c5a74175d/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk21-u5c5a74175d/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk22-u5c5a74175d/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk23-u5c5a74175d/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk24-u5c5a74175d/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk25-u5c5a74175d/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk26-u5c5a74175d/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk27-u5c5a74175d/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk28-u5c5a74175d/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk29-u5c5a74175d/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk30-u5c5a74175d/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk31-u5c5a74175d/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk32-u5c5a74175d/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk33-u5c5a74175d/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk34-u5c5a74175d/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk35-u5c5a74175d/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk36-u5c5a74175e/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk37-u5c5a74175e/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk38-u5c5a74175e/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk39-u5c5a74175e/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk40-u5c5a74175e/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk41-u5c5a74175e/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk42-u5c5a74175e/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk43-u5c5a74175e/files/bc-GT-1.bam",
                                    "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/BUCKET_BY_BC/fork0/chnk44-u5c5a74175e/files/bc-GT-1.bam"
                                ]
                            },
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/counter/sort_reads_by_bc"
    },
    {
        "name": "SORT_BY_POS",
        "fqname": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 6,
                    "__mem_gb": 4,
                    "__vmem_gb": 7
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk00-u5c5a741ec9/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk00",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk01-u5c5a741ec9/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk01",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk02-u5c5a741eca/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk02",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk03-u5c5a741eca/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk03",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk04-u5c5a741eca/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk04",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk05-u5c5a741eca/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk05",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk06-u5c5a741eca/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk06",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 7,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk07-u5c5a741eca/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk07",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 8,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk08-u5c5a741eca/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk08",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 9,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk09-u5c5a741eca/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk09",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 10,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk10-u5c5a741eca/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk10",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 11,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk11-u5c5a741eca/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk11",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 12,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk12-u5c5a741eca/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk12",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 13,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk13-u5c5a741eca/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk13",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 14,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk14-u5c5a741ecb/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk14",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 15,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk15-u5c5a741ecb/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk15",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 16,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk16-u5c5a741ecb/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk16",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 17,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk17-u5c5a741ecb/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk17",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 18,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk18-u5c5a741ecb/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk18",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 19,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk19-u5c5a741ecb/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk19",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 20,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk20-u5c5a741ecb/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk20",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 21,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk21-u5c5a741ecb/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk21",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 22,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk22-u5c5a741ecb/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk22",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 23,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk23-u5c5a741ecb/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk23",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 24,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk24-u5c5a741ecb/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk24",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 25,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk25-u5c5a741ecb/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk25",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 26,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk26-u5c5a741ecb/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk26",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 27,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk27-u5c5a741ecc/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk27",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 28,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk28-u5c5a741ecc/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk28",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 29,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk29-u5c5a741ecc/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk29",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 30,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk30-u5c5a741ecc/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk30",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 31,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk31-u5c5a741ecc/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk31",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 32,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk32-u5c5a741ecc/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk32",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 33,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk33-u5c5a741ecc/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk33",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 34,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk34-u5c5a741ecc/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk34",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 35,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk35-u5c5a741ecc/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk35",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 36,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk36-u5c5a741ecc/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk36",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 37,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk37-u5c5a741ecd/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk37",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 38,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk38-u5c5a741ecd/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk38",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 39,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk39-u5c5a741ecd/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk39",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 40,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk40-u5c5a741ecd/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk40",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 41,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk41-u5c5a741ecd/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk41",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 42,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk42-u5c5a741ecd/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk42",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 43,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk43-u5c5a741ecd/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk43",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 44,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk44-u5c5a741ecd/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk44",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 45,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk45-u5c5a741ecd/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk45",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 46,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_input": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk46-u5c5a741ecd/files/alignments.bam"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SORT_BY_POS/fork0/chnk46",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "inputs",
                            "type": "bam",
                            "valexp": "MARK_DUPLICATES.output",
                            "mode": "reference",
                            "output": "output",
                            "sweep": false,
                            "sweepRootId": "inputs",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": [
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk00-u5c5a741ec9/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk01-u5c5a741ec9/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk02-u5c5a741eca/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk03-u5c5a741eca/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk04-u5c5a741eca/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk05-u5c5a741eca/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk06-u5c5a741eca/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk07-u5c5a741eca/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk08-u5c5a741eca/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk09-u5c5a741eca/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk10-u5c5a741eca/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk11-u5c5a741eca/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk12-u5c5a741eca/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk13-u5c5a741eca/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk14-u5c5a741ecb/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk15-u5c5a741ecb/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk16-u5c5a741ecb/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk17-u5c5a741ecb/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk18-u5c5a741ecb/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk19-u5c5a741ecb/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk20-u5c5a741ecb/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk21-u5c5a741ecb/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk22-u5c5a741ecb/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk23-u5c5a741ecb/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk24-u5c5a741ecb/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk25-u5c5a741ecb/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk26-u5c5a741ecb/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk27-u5c5a741ecc/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk28-u5c5a741ecc/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk29-u5c5a741ecc/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk30-u5c5a741ecc/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk31-u5c5a741ecc/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk32-u5c5a741ecc/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk33-u5c5a741ecc/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk34-u5c5a741ecc/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk35-u5c5a741ecc/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk36-u5c5a741ecc/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk37-u5c5a741ecd/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk38-u5c5a741ecd/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk39-u5c5a741ecd/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk40-u5c5a741ecd/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk41-u5c5a741ecd/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk42-u5c5a741ecd/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk43-u5c5a741ecd/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk44-u5c5a741ecd/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk45-u5c5a741ecd/files/alignments.bam",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/chnk46-u5c5a741ecd/files/alignments.bam"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "num_threads",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "num_threads",
                            "node": "SORT_BY_POS",
                            "matchedFork": 0,
                            "value": 6,
                            "waiting": false
                        },
                        {
                            "id": "mem_gb",
                            "type": "int",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "mem_gb",
                            "node": "SORT_BY_POS",
                            "matchedFork": 0,
                            "value": 2,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/counter/sort_reads_by_pos"
    },
    {
        "name": "SUBSAMPLE_READS",
        "fqname": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUBSAMPLE_READS",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUBSAMPLE_READS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 6,
                    "__vmem_gb": 9
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUBSAMPLE_READS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUBSAMPLE_READS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUBSAMPLE_READS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_len": 8751515,
                            "chunk_start": 0,
                            "subsample_info": [
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 5000,
                                    "library_subsample_rates": [
                                        0.04499269057747416
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 11113,
                                    "library_subsample_rates": [
                                        0.10000075407749408
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 20000,
                                    "library_subsample_rates": [
                                        0.17997076230989664
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 22226,
                                    "library_subsample_rates": [
                                        0.20000150815498816
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 33339,
                                    "library_subsample_rates": [
                                        0.3000022622324822
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 44452,
                                    "library_subsample_rates": [
                                        0.4000030163099763
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 50000,
                                    "library_subsample_rates": [
                                        0.4499269057747416
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 55565,
                                    "library_subsample_rates": [
                                        0.5000037703874703
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 66677,
                                    "library_subsample_rates": [
                                        0.5999955259268489
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 77790,
                                    "library_subsample_rates": [
                                        0.699996280004343
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 88903,
                                    "library_subsample_rates": [
                                        0.7999970340818371
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 100016,
                                    "library_subsample_rates": [
                                        0.8999977881593312
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 111129,
                                    "library_subsample_rates": [
                                        1.0
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 5000,
                                    "library_subsample_rates": [
                                        0.7066767240898039
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 11113,
                                    "library_subsample_rates": [
                                        0.0
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 20000,
                                    "library_subsample_rates": [
                                        0.0
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 22226,
                                    "library_subsample_rates": [
                                        0.0
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 33339,
                                    "library_subsample_rates": [
                                        0.0
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 44452,
                                    "library_subsample_rates": [
                                        0.0
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 50000,
                                    "library_subsample_rates": [
                                        0.0
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 55565,
                                    "library_subsample_rates": [
                                        0.0
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 66677,
                                    "library_subsample_rates": [
                                        0.0
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 77790,
                                    "library_subsample_rates": [
                                        0.0
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 88903,
                                    "library_subsample_rates": [
                                        0.0
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 100016,
                                    "library_subsample_rates": [
                                        0.0
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 111129,
                                    "library_subsample_rates": [
                                        0.0
                                    ]
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUBSAMPLE_READS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "molecule_info",
                            "type": "h5",
                            "valexp": "REPORT_MOLECULES.output",
                            "mode": "reference",
                            "output": "output",
                            "sweep": false,
                            "sweepRootId": "molecule_info",
                            "node": "REPORT_MOLECULES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/join-u5c5a7427d0/files/output.h5",
                            "waiting": false
                        },
                        {
                            "id": "filtered_barcodes",
                            "type": "csv",
                            "valexp": "FILTER_BARCODES.filtered_barcodes",
                            "mode": "reference",
                            "output": "filtered_barcodes",
                            "sweep": false,
                            "sweepRootId": "filtered_barcodes",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-u5c5a742785/files/filtered_barcodes.csv",
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/counter/subsample_reads"
    },
    {
        "name": "SUMMARIZE_BASIC_REPORTS",
        "fqname": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_BASIC_REPORTS",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_BASIC_REPORTS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_BASIC_REPORTS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_BASIC_REPORTS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_BASIC_REPORTS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_BASIC_REPORTS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "gem_groups",
                            "type": "int",
                            "valexp": "SUMMARIZE_READ_REPORTS.gem_groups",
                            "mode": "reference",
                            "output": "gem_groups",
                            "sweep": false,
                            "sweepRootId": "gem_groups",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": [
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1
                            ],
                            "waiting": false
                        },
                        {
                            "id": "extract_reads_summary",
                            "type": "json",
                            "valexp": "SUMMARIZE_READ_REPORTS.summary",
                            "mode": "reference",
                            "output": "summary",
                            "sweep": false,
                            "sweepRootId": "extract_reads_summary",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/join-u5c5a7401e0/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "attach_bcs_and_umis_summary",
                            "type": "json",
                            "valexp": "ATTACH_BCS_AND_UMIS.summary",
                            "mode": "reference",
                            "output": "summary",
                            "sweep": false,
                            "sweepRootId": "attach_bcs_and_umis_summary",
                            "node": "ATTACH_BCS_AND_UMIS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/ATTACH_BCS_AND_UMIS/fork0/join-u5c5a740e02/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "mark_duplicates_summary",
                            "type": "json",
                            "valexp": "MARK_DUPLICATES.summary",
                            "mode": "reference",
                            "output": "summary",
                            "sweep": false,
                            "sweepRootId": "mark_duplicates_summary",
                            "node": "MARK_DUPLICATES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/MARK_DUPLICATES/fork0/join-u5c5a741eaf/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "filter_barcodes_summary",
                            "type": "json",
                            "valexp": "FILTER_BARCODES.summary",
                            "mode": "reference",
                            "output": "summary",
                            "sweep": false,
                            "sweepRootId": "filter_barcodes_summary",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-u5c5a742785/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "raw_gene_bc_matrices_h5",
                            "type": "h5",
                            "valexp": "COUNT_GENES.matrices_h5",
                            "mode": "reference",
                            "output": "matrices_h5",
                            "sweep": false,
                            "sweepRootId": "raw_gene_bc_matrices_h5",
                            "node": "COUNT_GENES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/join-u5c5a742053/files/matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "filtered_gene_bc_matrices_h5",
                            "type": "h5",
                            "valexp": "FILTER_BARCODES.filtered_matrices_h5",
                            "mode": "reference",
                            "output": "filtered_matrices_h5",
                            "sweep": false,
                            "sweepRootId": "filtered_gene_bc_matrices_h5",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-u5c5a742785/files/filtered_matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "barcode_whitelist",
                            "type": "string",
                            "valexp": "self.barcode_whitelist",
                            "mode": "reference",
                            "output": "barcode_whitelist",
                            "sweep": false,
                            "sweepRootId": "barcode_whitelist",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": "3M-february-2018",
                            "waiting": false
                        },
                        {
                            "id": "align",
                            "type": "map",
                            "valexp": "SUMMARIZE_READ_REPORTS.align",
                            "mode": "reference",
                            "output": "align",
                            "sweep": false,
                            "sweepRootId": "align",
                            "node": "SUMMARIZE_READ_REPORTS",
                            "matchedFork": 0,
                            "value": {
                                "aligner": "star",
                                "high_conf_mapq": 255
                            },
                            "waiting": false
                        },
                        {
                            "id": "count_genes_reporter_summary",
                            "type": "json",
                            "valexp": "COUNT_GENES.reporter_summary",
                            "mode": "reference",
                            "output": "reporter_summary",
                            "sweep": false,
                            "sweepRootId": "count_genes_reporter_summary",
                            "node": "COUNT_GENES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/join-u5c5a742053/files/reporter_summary.json",
                            "waiting": false
                        },
                        {
                            "id": "subsample_molecules_summary",
                            "type": "json",
                            "valexp": "SUBSAMPLE_READS.summary",
                            "mode": "reference",
                            "output": "summary",
                            "sweep": false,
                            "sweepRootId": "subsample_molecules_summary",
                            "node": "SUBSAMPLE_READS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUBSAMPLE_READS/fork0/join-u5c5a74297a/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "valexp": "self.reference_path",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "reference_path",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/ref/mm9/mm9_usethis",
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/counter/summarize_basic_reports"
    },
    {
        "name": "SUMMARIZE_READ_REPORTS",
        "fqname": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS",
        "state": "complete",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk00-u5c5a73f701/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk00",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk01-u5c5a73f701/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk01",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk02-u5c5a73f701/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk02",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk03-u5c5a73f701/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk03",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk04-u5c5a73f701/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk04",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk05-u5c5a73f701/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk05",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk06-u5c5a73f702/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk06",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 7,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk07-u5c5a73f702/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk07",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 8,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk08-u5c5a73f702/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk08",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 9,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk09-u5c5a73f702/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk09",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 10,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk10-u5c5a73f702/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk10",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 11,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk11-u5c5a73f702/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk11",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 12,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk12-u5c5a73f702/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk12",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 13,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk13-u5c5a73f702/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk13",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 14,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk14-u5c5a73f702/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk14",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 15,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk15-u5c5a73f702/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk15",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 16,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk16-u5c5a73f702/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk16",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 17,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk17-u5c5a73f702/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk17",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 18,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk18-u5c5a73f702/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk18",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 19,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk19-u5c5a73f703/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk19",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 20,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk20-u5c5a73f703/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk20",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 21,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk21-u5c5a73f703/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk21",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 22,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk22-u5c5a73f703/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk22",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 23,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk23-u5c5a73f703/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk23",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 24,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk24-u5c5a73f703/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk24",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 25,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk25-u5c5a73f703/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk25",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 26,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk26-u5c5a73f703/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk26",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 27,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk27-u5c5a73f703/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk27",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 28,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk28-u5c5a73f703/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk28",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 29,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk29-u5c5a73f703/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk29",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 30,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk30-u5c5a73f703/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk30",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 31,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk31-u5c5a73f703/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk31",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 32,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk32-u5c5a73f704/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk32",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 33,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk33-u5c5a73f704/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk33",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 34,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk34-u5c5a73f704/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk34",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 35,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk35-u5c5a73f704/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk35",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 36,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk36-u5c5a73f704/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk36",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 37,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk37-u5c5a73f704/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk37",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 38,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk38-u5c5a73f704/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk38",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 39,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk39-u5c5a73f704/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk39",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 40,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk40-u5c5a73f704/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk40",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 41,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk41-u5c5a73f704/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk41",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 42,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk42-u5c5a73f705/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk42",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 43,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk43-u5c5a73f705/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk43",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 44,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "chunk_tags": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk44-u5c5a73f705/files/tags.fastq/1.fastq.lz4",
                            "read1": null,
                            "read2": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_READ_REPORTS/fork0/chnk44",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "gem_groups",
                            "type": "int",
                            "valexp": "EXTRACT_READS.gem_groups",
                            "mode": "reference",
                            "output": "gem_groups",
                            "sweep": false,
                            "sweepRootId": "gem_groups",
                            "node": "EXTRACT_READS",
                            "matchedFork": 0,
                            "value": [
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1
                            ],
                            "waiting": false
                        },
                        {
                            "id": "library_ids",
                            "type": "string",
                            "valexp": "EXTRACT_READS.library_ids",
                            "mode": "reference",
                            "output": "library_ids",
                            "sweep": false,
                            "sweepRootId": "library_ids",
                            "node": "EXTRACT_READS",
                            "matchedFork": 0,
                            "value": [
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0",
                                "0"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "read1s",
                            "type": "fastq",
                            "valexp": "EXTRACT_READS.reads",
                            "mode": "reference",
                            "output": "reads",
                            "sweep": false,
                            "sweepRootId": "read1s",
                            "node": "EXTRACT_READS",
                            "matchedFork": 0,
                            "value": [
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk00-u5c5a73f701/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk01-u5c5a73f701/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk02-u5c5a73f701/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk03-u5c5a73f701/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk04-u5c5a73f701/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk05-u5c5a73f701/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk06-u5c5a73f702/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk07-u5c5a73f702/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk08-u5c5a73f702/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk09-u5c5a73f702/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk10-u5c5a73f702/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk11-u5c5a73f702/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk12-u5c5a73f702/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk13-u5c5a73f702/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk14-u5c5a73f702/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk15-u5c5a73f702/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk16-u5c5a73f702/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk17-u5c5a73f702/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk18-u5c5a73f702/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk19-u5c5a73f703/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk20-u5c5a73f703/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk21-u5c5a73f703/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk22-u5c5a73f703/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk23-u5c5a73f703/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk24-u5c5a73f703/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk25-u5c5a73f703/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk26-u5c5a73f703/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk27-u5c5a73f703/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk28-u5c5a73f703/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk29-u5c5a73f703/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk30-u5c5a73f703/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk31-u5c5a73f703/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk32-u5c5a73f704/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk33-u5c5a73f704/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk34-u5c5a73f704/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk35-u5c5a73f704/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk36-u5c5a73f704/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk37-u5c5a73f704/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk38-u5c5a73f704/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk39-u5c5a73f704/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk40-u5c5a73f704/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk41-u5c5a73f704/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk42-u5c5a73f705/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk43-u5c5a73f705/files/reads.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk44-u5c5a73f705/files/reads.fastq/1.fastq.lz4"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "library_types",
                            "type": "string",
                            "valexp": "EXTRACT_READS.library_types",
                            "mode": "reference",
                            "output": "library_types",
                            "sweep": false,
                            "sweepRootId": "library_types",
                            "node": "EXTRACT_READS",
                            "matchedFork": 0,
                            "value": [
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression",
                                "Gene Expression"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "read_groups",
                            "type": "string",
                            "valexp": "EXTRACT_READS.read_groups",
                            "mode": "reference",
                            "output": "read_groups",
                            "sweep": false,
                            "sweepRootId": "read_groups",
                            "node": "EXTRACT_READS",
                            "matchedFork": 0,
                            "value": [
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7",
                                "10X_G171C_mm9_2000:0:1:H3LTJBBXX:7"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "retain_fastqs",
                            "type": "bool",
                            "valexp": "self.retain_fastqs",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "retain_fastqs",
                            "node": "SC_RNA_COUNTER",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "chemistry_def",
                            "type": "map",
                            "valexp": "self.chemistry_def",
                            "mode": "reference",
                            "output": "chemistry_def",
                            "sweep": false,
                            "sweepRootId": "chemistry_def",
                            "node": "SETUP_CHUNKS",
                            "matchedFork": 0,
                            "value": {
                                "si_read_offset": 0,
                                "strandedness": "+",
                                "umi_read_offset": 16,
                                "barcode_read_type": "R1",
                                "umi_read_type": "R1",
                                "barcode_read_length": 16,
                                "rna_read_type": "R2",
                                "barcode_whitelist": "3M-february-2018",
                                "si_read_type": "I1",
                                "rna_read_length": null,
                                "description": "Single Cell 3' v3",
                                "rna_read_offset": 0,
                                "barcode_read_offset": 0,
                                "rna_read2_type": null,
                                "endedness": "three_prime",
                                "name": "SC3Pv3",
                                "umi_read_length": 12,
                                "si_read_length": null,
                                "read_type_to_bcl2fastq_filename": {
                                    "I1": "I1",
                                    "I2": null,
                                    "R1": "R1",
                                    "R2": "R2"
                                },
                                "rna_read2_length": null,
                                "rna_read2_offset": 0,
                                "read_type_to_bcl_processor_filename": {
                                    "I1": "I1",
                                    "I2": "I2",
                                    "R1": "RA",
                                    "R2": null
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "feature_counts",
                            "type": "json",
                            "valexp": "EXTRACT_READS.feature_counts",
                            "mode": "reference",
                            "output": "feature_counts",
                            "sweep": false,
                            "sweepRootId": "feature_counts",
                            "node": "EXTRACT_READS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/join-u5c5a73f6fa/files/feature_counts.json",
                            "waiting": false
                        },
                        {
                            "id": "bam_comments",
                            "type": "string",
                            "valexp": "EXTRACT_READS.bam_comments",
                            "mode": "reference",
                            "output": "bam_comments",
                            "sweep": false,
                            "sweepRootId": "bam_comments",
                            "node": "EXTRACT_READS",
                            "matchedFork": 0,
                            "value": [
                                "10x_bam_to_fastq:I1(BC:QT)",
                                "10x_bam_to_fastq:R1(CR:CY,UR:UY)",
                                "10x_bam_to_fastq:R2(SEQ:QUAL)"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "read2s",
                            "type": "fastq",
                            "valexp": "EXTRACT_READS.read2s",
                            "mode": "reference",
                            "output": "read2s",
                            "sweep": false,
                            "sweepRootId": "read2s",
                            "node": "EXTRACT_READS",
                            "matchedFork": 0,
                            "value": [],
                            "waiting": false
                        },
                        {
                            "id": "tags",
                            "type": "fastq",
                            "valexp": "EXTRACT_READS.tags",
                            "mode": "reference",
                            "output": "tags",
                            "sweep": false,
                            "sweepRootId": "tags",
                            "node": "EXTRACT_READS",
                            "matchedFork": 0,
                            "value": [
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk00-u5c5a73f701/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk01-u5c5a73f701/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk02-u5c5a73f701/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk03-u5c5a73f701/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk04-u5c5a73f701/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk05-u5c5a73f701/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk06-u5c5a73f702/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk07-u5c5a73f702/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk08-u5c5a73f702/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk09-u5c5a73f702/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk10-u5c5a73f702/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk11-u5c5a73f702/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk12-u5c5a73f702/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk13-u5c5a73f702/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk14-u5c5a73f702/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk15-u5c5a73f702/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk16-u5c5a73f702/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk17-u5c5a73f702/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk18-u5c5a73f702/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk19-u5c5a73f703/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk20-u5c5a73f703/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk21-u5c5a73f703/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk22-u5c5a73f703/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk23-u5c5a73f703/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk24-u5c5a73f703/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk25-u5c5a73f703/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk26-u5c5a73f703/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk27-u5c5a73f703/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk28-u5c5a73f703/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk29-u5c5a73f703/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk30-u5c5a73f703/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk31-u5c5a73f703/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk32-u5c5a73f704/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk33-u5c5a73f704/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk34-u5c5a73f704/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk35-u5c5a73f704/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk36-u5c5a73f704/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk37-u5c5a73f704/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk38-u5c5a73f704/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk39-u5c5a73f704/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk40-u5c5a73f704/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk41-u5c5a73f704/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk42-u5c5a73f705/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk43-u5c5a73f705/files/tags.fastq/1.fastq.lz4",
                                "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/chnk44-u5c5a73f705/files/tags.fastq/1.fastq.lz4"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "extract_reads_summary",
                            "type": "json",
                            "valexp": "EXTRACT_READS.summary",
                            "mode": "reference",
                            "output": "summary",
                            "sweep": false,
                            "sweepRootId": "extract_reads_summary",
                            "node": "EXTRACT_READS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/join-u5c5a73f6fa/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "barcode_counts",
                            "type": "json",
                            "valexp": "EXTRACT_READS.barcode_counts",
                            "mode": "reference",
                            "output": "barcode_counts",
                            "sweep": false,
                            "sweepRootId": "barcode_counts",
                            "node": "EXTRACT_READS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/EXTRACT_READS/fork0/join-u5c5a73f6fa/files/barcode_counts.json",
                            "waiting": false
                        },
                        {
                            "id": "align",
                            "type": "map",
                            "valexp": "EXTRACT_READS.align",
                            "mode": "reference",
                            "output": "align",
                            "sweep": false,
                            "sweepRootId": "align",
                            "node": "EXTRACT_READS",
                            "matchedFork": 0,
                            "value": {
                                "aligner": "star",
                                "high_conf_mapq": 255
                            },
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/counter/summarize_read_reports"
    },
    {
        "name": "_CRISPR_ANALYZER",
        "fqname": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER",
        "type": "pipeline",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER",
        "state": "disabled",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/fork0",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "counter_metrics_json",
                            "type": "json",
                            "valexp": "_BASIC_SC_RNA_COUNTER.summary",
                            "mode": "reference",
                            "output": "summary",
                            "sweep": false,
                            "sweepRootId": "counter_metrics_json",
                            "node": "SUMMARIZE_BASIC_REPORTS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_BASIC_REPORTS/fork0/join-u5c5a7429eb/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "molecule_info",
                            "type": "h5",
                            "valexp": "_BASIC_SC_RNA_COUNTER.molecule_info",
                            "mode": "reference",
                            "output": "output",
                            "sweep": false,
                            "sweepRootId": "molecule_info",
                            "node": "REPORT_MOLECULES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/join-u5c5a7427d0/files/output.h5",
                            "waiting": false
                        },
                        {
                            "id": "filtered_feature_counts_matrix",
                            "type": "h5",
                            "valexp": "_BASIC_SC_RNA_COUNTER.filtered_gene_bc_matrices_h5",
                            "mode": "reference",
                            "output": "filtered_matrices_h5",
                            "sweep": false,
                            "sweepRootId": "filtered_feature_counts_matrix",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-u5c5a742785/files/filtered_matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "filtered_barcodes",
                            "type": "csv",
                            "valexp": "_BASIC_SC_RNA_COUNTER.filtered_barcodes",
                            "mode": "reference",
                            "output": "filtered_barcodes",
                            "sweep": false,
                            "sweepRootId": "filtered_barcodes",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-u5c5a742785/files/filtered_barcodes.csv",
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "valexp": "self.feature_reference",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "feature_reference",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "crispr_analysis_metrics",
                            "type": "json",
                            "valexp": "CALL_PROTOSPACERS.protospacer_call_metrics_json",
                            "mode": "reference",
                            "output": "protospacer_call_metrics_json",
                            "sweep": false,
                            "sweepRootId": "crispr_analysis_metrics",
                            "node": "CALL_PROTOSPACERS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "crispr_analysis",
                            "type": "path",
                            "valexp": "SUMMARIZE_CRISPR_ANALYSIS.crispr_analysis",
                            "mode": "reference",
                            "output": "crispr_analysis",
                            "sweep": false,
                            "sweepRootId": "crispr_analysis",
                            "node": "SUMMARIZE_CRISPR_ANALYSIS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.CALL_PROTOSPACERS",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "CALL_PROTOSPACERS",
        "fqname": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.CALL_PROTOSPACERS",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/CALL_PROTOSPACERS",
        "state": "disabled",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/CALL_PROTOSPACERS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/CALL_PROTOSPACERS/fork0",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/CALL_PROTOSPACERS/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/CALL_PROTOSPACERS/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "filtered_barcodes",
                            "type": "csv",
                            "valexp": "self.filtered_barcodes",
                            "mode": "reference",
                            "output": "filtered_barcodes",
                            "sweep": false,
                            "sweepRootId": "filtered_barcodes",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-u5c5a742785/files/filtered_barcodes.csv",
                            "waiting": false
                        },
                        {
                            "id": "molecule_info",
                            "type": "h5",
                            "valexp": "self.molecule_info",
                            "mode": "reference",
                            "output": "output",
                            "sweep": false,
                            "sweepRootId": "molecule_info",
                            "node": "REPORT_MOLECULES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/REPORT_MOLECULES/fork0/join-u5c5a7427d0/files/output.h5",
                            "waiting": false
                        },
                        {
                            "id": "filtered_feature_counts_matrix",
                            "type": "h5",
                            "valexp": "self.filtered_feature_counts_matrix",
                            "mode": "reference",
                            "output": "filtered_matrices_h5",
                            "sweep": false,
                            "sweepRootId": "filtered_feature_counts_matrix",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-u5c5a742785/files/filtered_matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "valexp": "self.feature_reference",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "feature_reference",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "counter_metrics_json",
                            "type": "json",
                            "valexp": "self.counter_metrics_json",
                            "mode": "reference",
                            "output": "summary",
                            "sweep": false,
                            "sweepRootId": "counter_metrics_json",
                            "node": "SUMMARIZE_BASIC_REPORTS",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/SUMMARIZE_BASIC_REPORTS/fork0/join-u5c5a7429eb/files/summary.json",
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.CALL_PROTOSPACERS"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.CALL_PROTOSPACERS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/feature/call_protospacers"
    },
    {
        "name": "SUMMARIZE_CRISPR_ANALYSIS",
        "fqname": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/SUMMARIZE_CRISPR_ANALYSIS",
        "state": "disabled",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/SUMMARIZE_CRISPR_ANALYSIS",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/SUMMARIZE_CRISPR_ANALYSIS/fork0",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/SUMMARIZE_CRISPR_ANALYSIS/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/SUMMARIZE_CRISPR_ANALYSIS/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "cells_per_protospacer",
                            "type": "json",
                            "valexp": "CALL_PROTOSPACERS.cells_per_protospacer",
                            "mode": "reference",
                            "output": "cells_per_protospacer",
                            "sweep": false,
                            "sweepRootId": "cells_per_protospacer",
                            "node": "CALL_PROTOSPACERS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "perturbations_efficiencies_by_target",
                            "type": "csv",
                            "valexp": "_PERTURBATIONS_BY_TARGET.perturbation_efficiencies",
                            "mode": "reference",
                            "output": "perturbation_efficiencies",
                            "sweep": false,
                            "sweepRootId": "perturbations_efficiencies_by_target",
                            "node": "_PERTURBATIONS_BY_TARGET",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "protospacer_calls_per_cell",
                            "type": "csv",
                            "valexp": "CALL_PROTOSPACERS.protospacer_calls_per_cell",
                            "mode": "reference",
                            "output": "protospacer_calls_per_cell",
                            "sweep": false,
                            "sweepRootId": "protospacer_calls_per_cell",
                            "node": "CALL_PROTOSPACERS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "protospacer_umi_thresholds_csv",
                            "type": "csv",
                            "valexp": "CALL_PROTOSPACERS.protospacer_umi_thresholds_csv",
                            "mode": "reference",
                            "output": "protospacer_umi_thresholds_csv",
                            "sweep": false,
                            "sweepRootId": "protospacer_umi_thresholds_csv",
                            "node": "CALL_PROTOSPACERS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "protospacer_umi_thresholds_json",
                            "type": "json",
                            "valexp": "CALL_PROTOSPACERS.protospacer_umi_thresholds_json",
                            "mode": "reference",
                            "output": "protospacer_umi_thresholds_json",
                            "sweep": false,
                            "sweepRootId": "protospacer_umi_thresholds_json",
                            "node": "CALL_PROTOSPACERS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "perturbation_efficiencies_by_feature",
                            "type": "csv",
                            "valexp": "_PERTURBATIONS_BY_FEATURE.perturbation_efficiencies",
                            "mode": "reference",
                            "output": "perturbation_efficiencies",
                            "sweep": false,
                            "sweepRootId": "perturbation_efficiencies_by_feature",
                            "node": "_PERTURBATIONS_BY_FEATURE",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "perturbation_effects_by_feature",
                            "type": "path",
                            "valexp": "_PERTURBATIONS_BY_FEATURE.perturbation_effects_path",
                            "mode": "reference",
                            "output": "perturbation_effects_path",
                            "sweep": false,
                            "sweepRootId": "perturbation_effects_by_feature",
                            "node": "_PERTURBATIONS_BY_FEATURE",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "perturbation_effects_by_target",
                            "type": "path",
                            "valexp": "_PERTURBATIONS_BY_TARGET.perturbation_effects_path",
                            "mode": "reference",
                            "output": "perturbation_effects_path",
                            "sweep": false,
                            "sweepRootId": "perturbation_effects_by_target",
                            "node": "_PERTURBATIONS_BY_TARGET",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "valexp": "self.feature_reference",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "feature_reference",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "protospacer_calls_summary",
                            "type": "csv",
                            "valexp": "CALL_PROTOSPACERS.protospacer_calls_summary",
                            "mode": "reference",
                            "output": "protospacer_calls_summary",
                            "sweep": false,
                            "sweepRootId": "protospacer_calls_summary",
                            "node": "CALL_PROTOSPACERS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.CALL_PROTOSPACERS",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/feature/summarize_crispr_analysis"
    },
    {
        "name": "_PERTURBATIONS_BY_FEATURE",
        "fqname": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/_PERTURBATIONS_BY_FEATURE",
        "state": "disabled",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/_PERTURBATIONS_BY_FEATURE",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/_PERTURBATIONS_BY_FEATURE/fork0",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/_PERTURBATIONS_BY_FEATURE/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/_PERTURBATIONS_BY_FEATURE/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "valexp": "self.feature_reference",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "feature_reference",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "by_feature",
                            "type": "bool",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "by_feature",
                            "node": "_PERTURBATIONS_BY_FEATURE",
                            "matchedFork": 0,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "ignore_multiples",
                            "type": "bool",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "ignore_multiples",
                            "node": "_PERTURBATIONS_BY_FEATURE",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "protospacer_calls_per_cell",
                            "type": "csv",
                            "valexp": "CALL_PROTOSPACERS.protospacer_calls_per_cell",
                            "mode": "reference",
                            "output": "protospacer_calls_per_cell",
                            "sweep": false,
                            "sweepRootId": "protospacer_calls_per_cell",
                            "node": "CALL_PROTOSPACERS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "filtered_feature_counts_matrix",
                            "type": "h5",
                            "valexp": "self.filtered_feature_counts_matrix",
                            "mode": "reference",
                            "output": "filtered_matrices_h5",
                            "sweep": false,
                            "sweepRootId": "filtered_feature_counts_matrix",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-u5c5a742785/files/filtered_matrices_h5.h5",
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.CALL_PROTOSPACERS",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/feature/measure_perturbations"
    },
    {
        "name": "_PERTURBATIONS_BY_TARGET",
        "fqname": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET",
        "type": "stage",
        "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/_PERTURBATIONS_BY_TARGET",
        "state": "disabled",
        "metadata": {
            "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/_PERTURBATIONS_BY_TARGET",
            "names": []
        },
        "sweepbindings": [],
        "forks": [
            {
                "index": 0,
                "argPermute": {},
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/_PERTURBATIONS_BY_TARGET/fork0",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/_PERTURBATIONS_BY_TARGET/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_CRISPR_ANALYZER/_PERTURBATIONS_BY_TARGET/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "protospacer_calls_per_cell",
                            "type": "csv",
                            "valexp": "CALL_PROTOSPACERS.protospacer_calls_per_cell",
                            "mode": "reference",
                            "output": "protospacer_calls_per_cell",
                            "sweep": false,
                            "sweepRootId": "protospacer_calls_per_cell",
                            "node": "CALL_PROTOSPACERS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "filtered_feature_counts_matrix",
                            "type": "h5",
                            "valexp": "self.filtered_feature_counts_matrix",
                            "mode": "reference",
                            "output": "filtered_matrices_h5",
                            "sweep": false,
                            "sweepRootId": "filtered_feature_counts_matrix",
                            "node": "FILTER_BARCODES",
                            "matchedFork": 0,
                            "value": "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-u5c5a742785/files/filtered_matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "valexp": "self.feature_reference",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "feature_reference",
                            "node": "SC_RNA_COUNTER_CS",
                            "matchedFork": 0,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "by_feature",
                            "type": "bool",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "by_feature",
                            "node": "_PERTURBATIONS_BY_TARGET",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "ignore_multiples",
                            "type": "bool",
                            "valexp": "",
                            "mode": "value",
                            "output": "",
                            "sweep": false,
                            "sweepRootId": "ignore_multiples",
                            "node": "_PERTURBATIONS_BY_TARGET",
                            "matchedFork": 0,
                            "value": false,
                            "waiting": false
                        }
                    ],
                    "Return": []
                }
            }
        ],
        "edges": [
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.CALL_PROTOSPACERS",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET"
            },
            {
                "from": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES",
                "to": "ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro/stages/feature/measure_perturbations"
    }
]