[stdout]
Checking sample info...
Checking FASTQ folder...
Checking libraries...
Checking reference...
Checking reference_path (/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/ref/mm10_ensmbl/mm10_premrna_v1.0_pcg-only) on scc-wk2...
Checking chemistry...
Checking system environment...
Checking optional arguments...
mrc: '3.1.0-v3.2.3'

mrp: '3.1.0-v3.2.3'

Anaconda: Python 2.7.14 :: Anaconda, Inc.

numpy: 1.14.2

scipy: 1.0.1

pysam: 0.14.1

h5py: 2.8.0

pandas: 0.22.0

STAR: STAR_2.5.1b

samtools: samtools 1.7
Using htslib 1.7
Copyright (C) 2018 Genome Research Ltd.

