Left reads: Input : 40016664 Mapped : 29419943 (73.5% of input) of these: 750916 ( 2.6%) have multiple alignments (82445 have >20) Right reads: Input : 40016664 Mapped : 28240737 (70.6% of input) of these: 723976 ( 2.6%) have multiple alignments (82443 have >20) 72.0% overall read mapping rate. Aligned pairs: 27356226 of these: 693846 ( 2.5%) have multiple alignments 193545 ( 0.7%) are discordant alignments 67.9% concordant pair alignment rate.