Left reads: Input : 28395815 Mapped : 18930596 (66.7% of input) of these: 731135 ( 3.9%) have multiple alignments (142373 have >20) Right reads: Input : 28395815 Mapped : 18340771 (64.6% of input) of these: 836260 ( 4.6%) have multiple alignments (142373 have >20) 65.6% overall read mapping rate. Aligned pairs: 17442159 of these: 531567 ( 3.0%) have multiple alignments 71267 ( 0.4%) are discordant alignments 61.2% concordant pair alignment rate.