Left reads: Input : 27881332 Mapped : 18258376 (65.5% of input) of these: 1281366 ( 7.0%) have multiple alignments (495680 have >20) Right reads: Input : 27881332 Mapped : 17936932 (64.3% of input) of these: 1327227 ( 7.4%) have multiple alignments (495677 have >20) 64.9% overall read mapping rate. Aligned pairs: 16774555 of these: 933650 ( 5.6%) have multiple alignments 100946 ( 0.6%) are discordant alignments 59.8% concordant pair alignment rate.