46414557 + 0 in total (QC-passed reads + QC-failed reads) 0 + 0 duplicates 46414557 + 0 mapped (100.00%:-nan%) 46414557 + 0 paired in sequencing 23604557 + 0 read1 22810000 + 0 read2 41484524 + 0 properly paired (89.38%:-nan%) 44098172 + 0 with itself and mate mapped 2316385 + 0 singletons (4.99%:-nan%) 109164 + 0 with mate mapped to a different chr 109164 + 0 with mate mapped to a different chr (mapQ>=5)