Left reads: Input : 40105679 Mapped : 31767298 (79.2% of input) of these: 930621 ( 2.9%) have multiple alignments (63698 have >20) Right reads: Input : 40105679 Mapped : 30566584 (76.2% of input) of these: 901332 ( 2.9%) have multiple alignments (63696 have >20) 77.7% overall read mapping rate. Aligned pairs: 29509687 of these: 861858 ( 2.9%) have multiple alignments 216799 ( 0.7%) are discordant alignments 73.0% concordant pair alignment rate.