3709187 + 0 in total (QC-passed reads + QC-failed reads) 0 + 0 duplicates 3709187 + 0 mapped (100.00%:-nan%) 3709187 + 0 paired in sequencing 1888028 + 0 read1 1821159 + 0 read2 1579282 + 0 properly paired (42.58%:-nan%) 3435554 + 0 with itself and mate mapped 273633 + 0 singletons (7.38%:-nan%) 1784638 + 0 with mate mapped to a different chr 0 + 0 with mate mapped to a different chr (mapQ>=5)