3693263 + 0 in total (QC-passed reads + QC-failed reads) 0 + 0 duplicates 3693263 + 0 mapped (100.00%:-nan%) 3693263 + 0 paired in sequencing 1887207 + 0 read1 1806056 + 0 read2 1635306 + 0 properly paired (44.28%:-nan%) 3459648 + 0 with itself and mate mapped 233615 + 0 singletons (6.33%:-nan%) 1746090 + 0 with mate mapped to a different chr 0 + 0 with mate mapped to a different chr (mapQ>=5)