Left reads: Input : 9213534 Mapped : 5754859 (62.5% of input) of these: 378234 ( 6.6%) have multiple alignments (34042 have >20) Right reads: Input : 9213534 Mapped : 4132631 (44.9% of input) of these: 249016 ( 6.0%) have multiple alignments (32428 have >20) 53.7% overall read mapping rate. Aligned pairs: 3845368 of these: 234874 ( 6.1%) have multiple alignments 176439 ( 4.6%) are discordant alignments 39.8% concordant pair alignment rate.