## htsjdk.samtools.metrics.StringHeader
# picard.analysis.CollectRnaSeqMetrics REF_FLAT=genes_refFlat RIBOSOMAL_INTERVALS=rRNA_intervalList_sorted STRAND_SPECIFICITY=SECOND_READ_TRANSCRIPTION_STRAND INPUT=G166_M1_primary_unique.bam OUTPUT=CollectRnaSeqMetrics/G166_M1_metrics    MINIMUM_LENGTH=500 RRNA_FRAGMENT_PERCENTAGE=0.8 METRIC_ACCUMULATION_LEVEL=[ALL_READS] ASSUME_SORTED=true STOP_AFTER=0 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Mon Dec 03 18:16:51 EST 2018

## METRICS CLASS	picard.analysis.RnaSeqMetrics
PF_BASES	PF_ALIGNED_BASES	RIBOSOMAL_BASES	CODING_BASES	UTR_BASES	INTRONIC_BASES	INTERGENIC_BASES	IGNORED_READS	CORRECT_STRAND_READS	INCORRECT_STRAND_READS	PCT_RIBOSOMAL_BASES	PCT_CODING_BASES	PCT_UTR_BASES	PCT_INTRONIC_BASES	PCT_INTERGENIC_BASES	PCT_MRNA_BASES	PCT_USABLE_BASES	PCT_CORRECT_STRAND_READS	MEDIAN_CV_COVERAGE	MEDIAN_5PRIME_BIAS	MEDIAN_3PRIME_BIAS	MEDIAN_5PRIME_TO_3PRIME_BIAS	SAMPLE	LIBRARY	READ_GROUP
463010700	462916843	5194600	66290758	137541014	216375248	37516313	0	3916201	157050	0.011221	0.143202	0.297118	0.467417	0.081043	0.44032	0.440231	0.961444	0.836083	0.409255	0.358019	1.25			

## HISTOGRAM	java.lang.Integer
normalized_position	All_Reads.normalized_coverage
0	0.273428
1	0.453575
2	0.661108
3	0.776745
4	0.902974
5	0.969098
6	1.034848
7	1.103685
8	1.161203
9	1.206342
10	1.207264
11	1.180528
12	1.21252
13	1.192645
14	1.191657
15	1.202364
16	1.199517
17	1.221984
18	1.264343
19	1.283816
20	1.26105
21	1.232736
22	1.245791
23	1.22251
24	1.182562
25	1.206294
26	1.216028
27	1.184048
28	1.185404
29	1.16682
30	1.145957
31	1.156864
32	1.133918
33	1.118878
34	1.100947
35	1.12417
36	1.127729
37	1.162456
38	1.153436
39	1.117085
40	1.110582
41	1.112796
42	1.114032
43	1.173899
44	1.141491
45	1.122851
46	1.103701
47	1.102446
48	1.136942
49	1.119295
50	1.078527
51	1.037038
52	1.059401
53	1.045457
54	1.051184
55	1.109906
56	1.101773
57	1.068427
58	1.037334
59	1.029341
60	1.060769
61	1.045355
62	1.009831
63	0.99067
64	1.005005
65	1.0179
66	1.01734
67	1.021219
68	1.000215
69	0.979776
70	0.948757
71	0.958688
72	0.968393
73	0.993318
74	0.992409
75	0.959675
76	0.952859
77	0.926795
78	0.90429
79	0.909016
80	0.883618
81	0.883061
82	0.860316
83	0.832531
84	0.840543
85	0.843197
86	0.83127
87	0.768206
88	0.78957
89	0.806718
90	0.788189
91	0.74693
92	0.680949
93	0.63624
94	0.63961
95	0.617014
96	0.589099
97	0.565803
98	0.493213
99	0.345004
100	0.171532