-----------------------
Start of variable list:
-----------------------
Sample_ID:
G123_M6
Dataset_DIR:
/restricted/projectnb/waxmanlab/kkarri/G123_Env
Sample_Labels_DIR:
/restricted/projectnb/waxmanlab/kkarri/G123_Env/Scripts/00_Setup_Pipeline
-----------------------
End of variable list
-----------------------
==========================================================
Starting on : Tue Dec 18 14:17:15 EST 2018
Running on node : scc-kb6
Current directory : /restricted/projectnb/waxmanlab/kkarri/G123_Env/Scripts/03_Read_Length
Current job ID : 359379
Current job name : Step_03_G123_M6
Task index number : undefined
Parameter for multiple cores : 1
==========================================================

Change dir to scratch directory


Print scratch directory location:

/scratch/359379.1.linga

Loading required modules...


List files in scratch directory:

total 2.1G
drwx------   2 kkarri waxmanlab  4.0K Dec 18 14:18 .
drwxrwxrwt. 20 root   root        84K Dec 18 14:17 ..
-rw-r-----   1 kkarri waxmanlab 1018M Dec 18 14:18 G123-pool-GCCAAT_GCCAAT_BC8TK0ANXX_L008_001.R1.fastq.gz
-rw-r-----   1 kkarri waxmanlab  1.1G Dec 18 14:19 G123-pool-GCCAAT_GCCAAT_BC8TK0ANXX_L008_001.R2.fastq.gz

Starting to run my commands


Unzip files:


Finished unzipping


Starting Read Length


Processing G123-pool-GCCAAT_GCCAAT_BC8TK0ANXX_L008_001.R1.fastq


Processing G123-pool-GCCAAT_GCCAAT_BC8TK0ANXX_L008_001.R2.fastq


Ending Read Length


List files in scratch

total 7.0G
drwx------   2 kkarri waxmanlab 4.0K Dec 18 14:21 .
drwxrwxrwt. 16 root   root       84K Dec 18 14:23 ..
-rw-r-----   1 kkarri waxmanlab 3.5G Dec 18 14:18 G123-pool-GCCAAT_GCCAAT_BC8TK0ANXX_L008_001.R1.fastq
-rw-r-----   1 kkarri waxmanlab 3.5G Dec 18 14:19 G123-pool-GCCAAT_GCCAAT_BC8TK0ANXX_L008_001.R2.fastq
==========================================================
Finished on : Tue Dec 18 14:23:46 EST 2018
0 hours, 6 minutes and 31 seconds elapsed.
==========================================================