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Run time for each submitted job:
Job run times that deviate from the average should be inspected for possible errors (check the job log files)
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02_FASTQC
Step_02_G110_M1.o5002975:0 hours, 0 minutes and 23 seconds elapsed.
Step_02_G110_M2.o5002977:0 hours, 0 minutes and 14 seconds elapsed.
Step_02_G110_M3.o5002978:0 hours, 0 minutes and 22 seconds elapsed.
Step_02_G110_M4.o5002980:0 hours, 0 minutes and 19 seconds elapsed.
03_Read_Length
Step_03_G110_M1.o5001376:0 hours, 0 minutes and 3 seconds elapsed.
Step_03_G110_M11.o8970572:0 hours, 0 minutes and 25 seconds elapsed.
Step_03_G110_M12.o8970573:0 hours, 1 minutes and 0 seconds elapsed.
Step_03_G110_M2.o5001377:0 hours, 0 minutes and 3 seconds elapsed.
Step_03_G110_M3.o5001379:0 hours, 0 minutes and 3 seconds elapsed.
Step_03_G110_M4.o5001380:0 hours, 0 minutes and 3 seconds elapsed.
Step_03_G110_M5.o8970570:0 hours, 0 minutes and 34 seconds elapsed.
Step_03_G110_M6.o8970571:0 hours, 0 minutes and 46 seconds elapsed.
04_TopHat_Single_End
Step_04_G110_M1.o5002186:0 hours, 12 minutes and 39 seconds elapsed.
Step_04_G110_M2.o5002187:0 hours, 11 minutes and 53 seconds elapsed.
Step_04_G110_M3.o5002188:0 hours, 12 minutes and 36 seconds elapsed.
Step_04_G110_M4.o5002189:0 hours, 12 minutes and 50 seconds elapsed.
05_Read_Strandness
Step_05_G110_M1.o5004646:0 hours, 1 minutes and 44 seconds elapsed.
Step_05_G110_M2.o5004647:0 hours, 1 minutes and 46 seconds elapsed.
Step_05_G110_M3.o5004648:0 hours, 1 minutes and 8 seconds elapsed.
Step_05_G110_M4.o5004650:0 hours, 1 minutes and 8 seconds elapsed.
06_CollectRnaSeqMetrics
Step_06_G110_M1.o5005406:0 hours, 0 minutes and 11 seconds elapsed.
Step_06_G110_M11.o8970803:0 hours, 0 minutes and 54 seconds elapsed.
Step_06_G110_M12.o8970804:0 hours, 1 minutes and 51 seconds elapsed.
Step_06_G110_M2.o5005407:0 hours, 0 minutes and 13 seconds elapsed.
Step_06_G110_M3.o5005408:0 hours, 0 minutes and 13 seconds elapsed.
Step_06_G110_M4.o5005409:0 hours, 0 minutes and 12 seconds elapsed.
Step_06_G110_M5.o8970801:0 hours, 1 minutes and 5 seconds elapsed.
Step_06_G110_M6.o8970802:0 hours, 1 minutes and 33 seconds elapsed.
07a_Extract_Counts_HTSeq
07b_Extract_Counts_featureCounts
08a_DiffExp_1_HTSeq
Step_08a_DiffExp_1a.o8994172:1 minutes and 24 seconds elapsed.
Step_08a_DiffExp_1b.o8994173:1 minutes and 27 seconds elapsed.
Step_08a_DiffExp_1c.o8994174:1 minutes and 27 seconds elapsed.
08b_DiffExp_1_featureCounts
Step_08b_DiffExp_1a.o8994176:1 minutes and 24 seconds elapsed.
Step_08b_DiffExp_1b.o8994177:1 minutes and 28 seconds elapsed.
Step_08b_DiffExp_1c.o8994178:1 minutes and 33 seconds elapsed.
08c_DiffExp_1_lncRNA_featureCounts
Step_08c_DiffExp_1d.o9009036:1 minutes and 1 seconds elapsed.
Step_08c_DiffExp_1e.o9009037:1 minutes and 32 seconds elapsed.
Step_08c_DiffExp_1f.o9009038:1 minutes and 32 seconds elapsed.
Step_08c_DiffExp_1g.o9009039:0 minutes and 58 seconds elapsed.
09_bamCorrelate
Step_09_bamCor_01.o9009044:0 hours, 20 minutes and 50 seconds elapsed.
Step_09_bamCor_02.o9009045:0 hours, 7 minutes and 58 seconds elapsed.
Step_09_bamCor_03.o9009046:0 hours, 42 minutes and 13 seconds elapsed.
Step_09_bamCor_04.o9009047:0 hours, 18 minutes and 8 seconds elapsed.
bamCor_Full.o9009043:0 hours, 37 minutes and 53 seconds elapsed.
10_UCSC_BigWig
Step_10_G110_M11.o9009451:0 hours, 21 minutes and 1 seconds elapsed.
Step_10_G110_M12.o9009452:0 hours, 15 minutes and 57 seconds elapsed.
Step_10_G110_M5.o9009449:0 hours, 21 minutes and 39 seconds elapsed.
Step_10_G110_M6.o9009450:0 hours, 32 minutes and 47 seconds elapsed.
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03_Run_Pipeline.sh run time:
2 hours, 24 minutes and 24 seconds elapsed.
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