## htsjdk.samtools.metrics.StringHeader
# CollectRnaSeqMetrics REF_FLAT=genes_refFlat RIBOSOMAL_INTERVALS=rRNA_intervalList_sorted STRAND_SPECIFICITY=NONE INPUT=M2Ezh12M_2_primary_unique.bam OUTPUT=CollectRnaSeqMetrics/M2Ezh12M_2_metrics    MINIMUM_LENGTH=500 RRNA_FRAGMENT_PERCENTAGE=0.8 METRIC_ACCUMULATION_LEVEL=[ALL_READS] ASSUME_SORTED=true STOP_AFTER=0 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false GA4GH_CLIENT_SECRETS=client_secrets.json USE_JDK_DEFLATER=false USE_JDK_INFLATER=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Mon Mar 09 10:58:16 EDT 2020

## METRICS CLASS	picard.analysis.RnaSeqMetrics
PF_BASES	PF_ALIGNED_BASES	RIBOSOMAL_BASES	CODING_BASES	UTR_BASES	INTRONIC_BASES	INTERGENIC_BASES	IGNORED_READS	CORRECT_STRAND_READS	INCORRECT_STRAND_READS	NUM_R1_TRANSCRIPT_STRAND_READS	NUM_R2_TRANSCRIPT_STRAND_READS	NUM_UNEXPLAINED_READS	PCT_R1_TRANSCRIPT_STRAND_READS	PCT_R2_TRANSCRIPT_STRAND_READS	PCT_RIBOSOMAL_BASES	PCT_CODING_BASES	PCT_UTR_BASES	PCT_INTRONIC_BASES	PCT_INTERGENIC_BASES	PCT_MRNA_BASES	PCT_USABLE_BASES	PCT_CORRECT_STRAND_READS	MEDIAN_CV_COVERAGE	MEDIAN_5PRIME_BIAS	MEDIAN_3PRIME_BIAS	MEDIAN_5PRIME_TO_3PRIME_BIAS	SAMPLE	LIBRARY	READ_GROUP
1303456800	1303368932	171592577	555633210	203183152	134115059	238844934	0	0	0	32024	9805335	21311	0.003255	0.996745	0.131653	0.426305	0.155891	0.102899	0.183252	0.582196	0.582157	0	0.85132	0.037058	0.651749	0.062546			

## HISTOGRAM	java.lang.Integer
normalized_position	All_Reads.normalized_coverage
0	0.033036
1	0.047536
2	0.086639
3	0.156873
4	0.215896
5	0.303751
6	0.404333
7	0.487669
8	0.563813
9	0.611613
10	0.649344
11	0.667897
12	0.738886
13	0.773759
14	0.789188
15	0.81656
16	0.84277
17	0.86992
18	0.89933
19	0.925498
20	0.945686
21	0.968802
22	0.979994
23	0.993281
24	1.009658
25	1.027344
26	1.051093
27	1.077681
28	1.080841
29	1.055651
30	1.0736
31	1.078392
32	1.097534
33	1.09706
34	1.134809
35	1.141807
36	1.134857
37	1.136828
38	1.13263
39	1.144423
40	1.160221
41	1.179135
42	1.188355
43	1.193472
44	1.18003
45	1.149954
46	1.146394
47	1.122419
48	1.140271
49	1.148768
50	1.159601
51	1.151893
52	1.130513
53	1.15679
54	1.170827
55	1.180164
56	1.163049
57	1.145153
58	1.177838
59	1.207776
60	1.231733
61	1.203951
62	1.163299
63	1.162595
64	1.165062
65	1.182361
66	1.15935
67	1.13783
68	1.145063
69	1.133774
70	1.134986
71	1.158413
72	1.163363
73	1.149946
74	1.12784
75	1.119087
76	1.115581
77	1.145021
78	1.148075
79	1.133312
80	1.120582
81	1.112999
82	1.096619
83	1.082318
84	1.108578
85	1.160217
86	1.160507
87	1.160599
88	1.178634
89	1.184222
90	1.16283
91	1.170646
92	1.192879
93	1.170907
94	1.131568
95	1.070944
96	1.020565
97	0.92755
98	0.734432
99	0.458706
100	0.174221