## htsjdk.samtools.metrics.StringHeader
# picard.analysis.CollectRnaSeqMetrics REF_FLAT=genes_refFlat RIBOSOMAL_INTERVALS=rRNA_intervalList_sorted STRAND_SPECIFICITY=SECOND_READ_TRANSCRIPTION_STRAND INPUT=G167_M7_primary_unique.bam OUTPUT=CollectRnaSeqMetrics/G167_M7_metrics    MINIMUM_LENGTH=500 RRNA_FRAGMENT_PERCENTAGE=0.8 METRIC_ACCUMULATION_LEVEL=[ALL_READS] ASSUME_SORTED=true STOP_AFTER=0 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Sun Jul 15 18:08:47 EDT 2018

## METRICS CLASS	picard.analysis.RnaSeqMetrics
PF_BASES	PF_ALIGNED_BASES	RIBOSOMAL_BASES	CODING_BASES	UTR_BASES	INTRONIC_BASES	INTERGENIC_BASES	IGNORED_READS	CORRECT_STRAND_READS	INCORRECT_STRAND_READS	PCT_RIBOSOMAL_BASES	PCT_CODING_BASES	PCT_UTR_BASES	PCT_INTRONIC_BASES	PCT_INTERGENIC_BASES	PCT_MRNA_BASES	PCT_USABLE_BASES	PCT_CORRECT_STRAND_READS	MEDIAN_CV_COVERAGE	MEDIAN_5PRIME_BIAS	MEDIAN_3PRIME_BIAS	MEDIAN_5PRIME_TO_3PRIME_BIAS	SAMPLE	LIBRARY	READ_GROUP
2896337493	2896148946	66945246	1958918446	692932275	31769263	145619584	0	16815362	17158	0.023115	0.676387	0.23926	0.010969	0.05028	0.915647	0.915588	0.998981	0.504605	0.257603	0.159007	1.656943			

## HISTOGRAM	java.lang.Integer
normalized_position	All_Reads.normalized_coverage
0	0.043552
1	0.082836
2	0.160341
3	0.253443
4	0.351525
5	0.448687
6	0.5364
7	0.612699
8	0.686899
9	0.751515
10	0.806287
11	0.855677
12	0.899938
13	0.938548
14	0.979196
15	1.014276
16	1.041962
17	1.069082
18	1.095751
19	1.116444
20	1.140603
21	1.162113
22	1.183171
23	1.198273
24	1.210531
25	1.224064
26	1.237081
27	1.250717
28	1.264606
29	1.280124
30	1.28548
31	1.290597
32	1.298119
33	1.303467
34	1.312991
35	1.322345
36	1.324033
37	1.329423
38	1.330813
39	1.33093
40	1.329237
41	1.329877
42	1.331711
43	1.327861
44	1.319776
45	1.31402
46	1.310269
47	1.308351
48	1.301859
49	1.298936
50	1.294501
51	1.288586
52	1.284984
53	1.287664
54	1.28584
55	1.280626
56	1.278243
57	1.279803
58	1.28406
59	1.287378
60	1.285329
61	1.27411
62	1.26515
63	1.258935
64	1.248305
65	1.237032
66	1.220528
67	1.211165
68	1.19656
69	1.183778
70	1.171517
71	1.16349
72	1.151743
73	1.128946
74	1.110439
75	1.086449
76	1.064111
77	1.042187
78	1.023381
79	1.003269
80	0.98583
81	0.965242
82	0.940321
83	0.915044
84	0.885251
85	0.847508
86	0.809152
87	0.759634
88	0.710082
89	0.661339
90	0.610084
91	0.550789
92	0.489733
93	0.424627
94	0.356697
95	0.284762
96	0.217534
97	0.151824
98	0.096085
99	0.050073
100	0.026065