## htsjdk.samtools.metrics.StringHeader
# picard.analysis.CollectRnaSeqMetrics REF_FLAT=genes_refFlat RIBOSOMAL_INTERVALS=rRNA_intervalList_sorted STRAND_SPECIFICITY=SECOND_READ_TRANSCRIPTION_STRAND INPUT=G167_M5_primary_unique.bam OUTPUT=CollectRnaSeqMetrics/G167_M5_metrics    MINIMUM_LENGTH=500 RRNA_FRAGMENT_PERCENTAGE=0.8 METRIC_ACCUMULATION_LEVEL=[ALL_READS] ASSUME_SORTED=true STOP_AFTER=0 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Sun Jul 15 18:08:48 EDT 2018

## METRICS CLASS	picard.analysis.RnaSeqMetrics
PF_BASES	PF_ALIGNED_BASES	RIBOSOMAL_BASES	CODING_BASES	UTR_BASES	INTRONIC_BASES	INTERGENIC_BASES	IGNORED_READS	CORRECT_STRAND_READS	INCORRECT_STRAND_READS	PCT_RIBOSOMAL_BASES	PCT_CODING_BASES	PCT_UTR_BASES	PCT_INTRONIC_BASES	PCT_INTERGENIC_BASES	PCT_MRNA_BASES	PCT_USABLE_BASES	PCT_CORRECT_STRAND_READS	MEDIAN_CV_COVERAGE	MEDIAN_5PRIME_BIAS	MEDIAN_3PRIME_BIAS	MEDIAN_5PRIME_TO_3PRIME_BIAS	SAMPLE	LIBRARY	READ_GROUP
2405807651	2405633728	74842244	1640191912	516732319	32962923	140943306	0	13382108	13693	0.031111	0.681813	0.214801	0.013702	0.058589	0.896614	0.896549	0.998978	0.507102	0.293928	0.142655	2.16619			

## HISTOGRAM	java.lang.Integer
normalized_position	All_Reads.normalized_coverage
0	0.075615
1	0.121072
2	0.20666
3	0.305376
4	0.380868
5	0.484164
6	0.578479
7	0.661354
8	0.745472
9	0.814027
10	0.871886
11	0.921067
12	0.965355
13	1.003362
14	1.043094
15	1.079934
16	1.111331
17	1.140283
18	1.165922
19	1.184978
20	1.205909
21	1.223323
22	1.245567
23	1.259461
24	1.267749
25	1.278324
26	1.288421
27	1.307537
28	1.320395
29	1.334655
30	1.341365
31	1.346109
32	1.348746
33	1.352731
34	1.353469
35	1.35661
36	1.35244
37	1.349702
38	1.337129
39	1.336962
40	1.337833
41	1.344034
42	1.345176
43	1.337233
44	1.328117
45	1.32392
46	1.320856
47	1.318517
48	1.311794
49	1.303672
50	1.293398
51	1.282336
52	1.278815
53	1.279817
54	1.275851
55	1.271765
56	1.266098
57	1.259686
58	1.259932
59	1.257494
60	1.252777
61	1.238898
62	1.226141
63	1.215616
64	1.200491
65	1.188132
66	1.17204
67	1.162035
68	1.148154
69	1.135965
70	1.124678
71	1.113778
72	1.099457
73	1.07961
74	1.064951
75	1.038819
76	1.015304
77	0.991259
78	0.972172
79	0.95195
80	0.932483
81	0.917732
82	0.891352
83	0.862615
84	0.829374
85	0.79034
86	0.748459
87	0.698938
88	0.640592
89	0.58682
90	0.534144
91	0.476842
92	0.418158
93	0.358436
94	0.298622
95	0.237887
96	0.180965
97	0.125264
98	0.076346
99	0.041237
100	0.024981