## htsjdk.samtools.metrics.StringHeader
# picard.analysis.CollectRnaSeqMetrics REF_FLAT=genes_refFlat RIBOSOMAL_INTERVALS=rRNA_intervalList_sorted STRAND_SPECIFICITY=SECOND_READ_TRANSCRIPTION_STRAND INPUT=G167_M4_primary_unique.bam OUTPUT=CollectRnaSeqMetrics/G167_M4_metrics    MINIMUM_LENGTH=500 RRNA_FRAGMENT_PERCENTAGE=0.8 METRIC_ACCUMULATION_LEVEL=[ALL_READS] ASSUME_SORTED=true STOP_AFTER=0 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Sun Jul 15 18:08:48 EDT 2018

## METRICS CLASS	picard.analysis.RnaSeqMetrics
PF_BASES	PF_ALIGNED_BASES	RIBOSOMAL_BASES	CODING_BASES	UTR_BASES	INTRONIC_BASES	INTERGENIC_BASES	IGNORED_READS	CORRECT_STRAND_READS	INCORRECT_STRAND_READS	PCT_RIBOSOMAL_BASES	PCT_CODING_BASES	PCT_UTR_BASES	PCT_INTRONIC_BASES	PCT_INTERGENIC_BASES	PCT_MRNA_BASES	PCT_USABLE_BASES	PCT_CORRECT_STRAND_READS	MEDIAN_CV_COVERAGE	MEDIAN_5PRIME_BIAS	MEDIAN_3PRIME_BIAS	MEDIAN_5PRIME_TO_3PRIME_BIAS	SAMPLE	LIBRARY	READ_GROUP
2266721098	2266539078	70574380	1544196482	488485610	31597290	131729392	0	12670020	13383	0.031138	0.681302	0.21552	0.013941	0.058119	0.896822	0.89675	0.998945	0.50174	0.294115	0.13636	2.179467			

## HISTOGRAM	java.lang.Integer
normalized_position	All_Reads.normalized_coverage
0	0.076614
1	0.123572
2	0.213889
3	0.316451
4	0.395281
5	0.500284
6	0.596
7	0.678204
8	0.760391
9	0.829937
10	0.887473
11	0.936926
12	0.980378
13	1.01975
14	1.063038
15	1.104769
16	1.135189
17	1.1602
18	1.180935
19	1.200083
20	1.221278
21	1.237185
22	1.256437
23	1.269767
24	1.278209
25	1.287689
26	1.298018
27	1.314913
28	1.3266
29	1.340093
30	1.345716
31	1.349619
32	1.352474
33	1.356462
34	1.35874
35	1.360588
36	1.353476
37	1.349125
38	1.33714
39	1.337539
40	1.339981
41	1.343159
42	1.344196
43	1.337022
44	1.330054
45	1.326898
46	1.322686
47	1.320631
48	1.314421
49	1.305697
50	1.295934
51	1.284242
52	1.280468
53	1.280358
54	1.275772
55	1.270783
56	1.261545
57	1.253264
58	1.254855
59	1.252229
60	1.24501
61	1.230484
62	1.219526
63	1.209893
64	1.196175
65	1.182677
66	1.16513
67	1.154852
68	1.142568
69	1.12963
70	1.116796
71	1.10675
72	1.0931
73	1.068751
74	1.050107
75	1.023192
76	1.0002
77	0.975826
78	0.954718
79	0.93429
80	0.914698
81	0.897576
82	0.871385
83	0.842826
84	0.810883
85	0.771508
86	0.729268
87	0.6814
88	0.627966
89	0.575684
90	0.5247
91	0.469402
92	0.412289
93	0.353614
94	0.293346
95	0.232098
96	0.175984
97	0.121806
98	0.074316
99	0.039862
100	0.024369