Left reads: Input : 12587531 Mapped : 7630840 (60.6% of input) of these: 1011490 (13.3%) have multiple alignments (17165 have >20) Right reads: Input : 12587531 Mapped : 7329297 (58.2% of input) of these: 979650 (13.4%) have multiple alignments (17167 have >20) 59.4% overall read mapping rate. Aligned pairs: 7147046 of these: 947675 (13.3%) have multiple alignments 40490 ( 0.6%) are discordant alignments 56.5% concordant pair alignment rate.