Left reads: Input : 16837804 Mapped : 11071815 (65.8% of input) of these: 1078202 ( 9.7%) have multiple alignments (17101 have >20) Right reads: Input : 16837804 Mapped : 10617708 (63.1% of input) of these: 1044599 ( 9.8%) have multiple alignments (16430 have >20) 64.4% overall read mapping rate. Aligned pairs: 10375093 of these: 1016621 ( 9.8%) have multiple alignments 38804 ( 0.4%) are discordant alignments 61.4% concordant pair alignment rate.