-----------------------
Start of variable list:
-----------------------
Sample_ID:
ERaflox_male3
Dataset_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/CAR_Project_Data/PRJNA395963_ERa
Sample_Labels_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/CAR_Project_Data/PRJNA395963_ERa/Scripts/00_Setup_Pipeline
-----------------------
End of variable list
-----------------------
==========================================================
Starting on : Tue Apr 30 12:42:58 EDT 2019
Running on node : scc-wa2
Current directory : /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/CAR_Project_Data/PRJNA395963_ERa/Scripts/03_Read_Length
Current job ID : 5785671
Current job name : Step_03_ERaflox_male3
Task index number : undefined
Parameter for multiple cores : 1
==========================================================

Change dir to scratch directory


Print scratch directory location:

/scratch/5785671.1.w-long

Loading required modules...


List files in scratch directory:

total 2.5G
drwx------   2 kkarri waxmanlab 4.0K Apr 30 12:52 .
drwxrwxrwt. 33 root   root       36K Apr 30 12:42 ..
-rw-r--r--   1 kkarri waxmanlab 1.2G Apr 30 12:52 SRR5874310_1.fastq.gz
-rw-r--r--   1 kkarri waxmanlab 1.3G Apr 30 12:54 SRR5874310_2.fastq.gz

Starting to run my commands


Unzip files:


Finished unzipping


Starting Read Length


Processing SRR5874310_1.fastq


Processing SRR5874310_2.fastq


Ending Read Length


List files in scratch

total 11G
drwx------   2 kkarri waxmanlab 4.0K Apr 30 12:55 .
drwxrwxrwt. 33 root   root       36K Apr 30 12:42 ..
-rw-r--r--   1 kkarri waxmanlab 5.5G Apr 30 12:52 SRR5874310_1.fastq
-rw-r--r--   1 kkarri waxmanlab 5.5G Apr 30 12:54 SRR5874310_2.fastq
==========================================================
Finished on : Tue Apr 30 12:56:46 EDT 2019
0 hours, 13 minutes and 48 seconds elapsed.
==========================================================