Left reads: Input : 47562052 Mapped : 46025598 (96.8% of input) of these: 6279175 (13.6%) have multiple alignments (887915 have >20) Right reads: Input : 47562052 Mapped : 45471435 (95.6% of input) of these: 6203924 (13.6%) have multiple alignments (886658 have >20) 96.2% overall read mapping rate. Aligned pairs: 44667835 of these: 6095421 (13.6%) have multiple alignments 265810 ( 0.6%) are discordant alignments 93.4% concordant pair alignment rate.