Left reads: Input : 31173630 Mapped : 30199258 (96.9% of input) of these: 5007669 (16.6%) have multiple alignments (990751 have >20) Right reads: Input : 31173630 Mapped : 29834808 (95.7% of input) of these: 4948870 (16.6%) have multiple alignments (986581 have >20) 96.3% overall read mapping rate. Aligned pairs: 29290300 of these: 4858290 (16.6%) have multiple alignments 199598 ( 0.7%) are discordant alignments 93.3% concordant pair alignment rate.