Left reads: Input : 5095465 Mapped : 4711733 (92.5% of input) of these: 411904 ( 8.7%) have multiple alignments (8809 have >20) Right reads: Input : 5095465 Mapped : 4459023 (87.5% of input) of these: 362780 ( 8.1%) have multiple alignments (8753 have >20) 90.0% overall read mapping rate. Aligned pairs: 4299092 of these: 347126 ( 8.1%) have multiple alignments 84284 ( 2.0%) are discordant alignments 82.7% concordant pair alignment rate.