## htsjdk.samtools.metrics.StringHeader
# picard.analysis.CollectRnaSeqMetrics REF_FLAT=genes_refFlat RIBOSOMAL_INTERVALS=rRNA_intervalList_sorted STRAND_SPECIFICITY=FIRST_READ_TRANSCRIPTION_STRAND INPUT=WT9_primary_unique.bam OUTPUT=CollectRnaSeqMetrics/WT9_metrics    MINIMUM_LENGTH=500 RRNA_FRAGMENT_PERCENTAGE=0.8 METRIC_ACCUMULATION_LEVEL=[ALL_READS] ASSUME_SORTED=true STOP_AFTER=0 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Tue Apr 30 04:27:12 EDT 2019

## METRICS CLASS	picard.analysis.RnaSeqMetrics
PF_BASES	PF_ALIGNED_BASES	RIBOSOMAL_BASES	CODING_BASES	UTR_BASES	INTRONIC_BASES	INTERGENIC_BASES	IGNORED_READS	CORRECT_STRAND_READS	INCORRECT_STRAND_READS	PCT_RIBOSOMAL_BASES	PCT_CODING_BASES	PCT_UTR_BASES	PCT_INTRONIC_BASES	PCT_INTERGENIC_BASES	PCT_MRNA_BASES	PCT_USABLE_BASES	PCT_CORRECT_STRAND_READS	MEDIAN_CV_COVERAGE	MEDIAN_5PRIME_BIAS	MEDIAN_3PRIME_BIAS	MEDIAN_5PRIME_TO_3PRIME_BIAS	SAMPLE	LIBRARY	READ_GROUP
357222126	357189439	28723075	198980776	82160991	18247264	29093357	0	95052	6340002	0.080414	0.557074	0.230021	0.051086	0.081451	0.787094	0.787022	0.014771	0.451464	0.390833	0.399093	1.027235			

## HISTOGRAM	java.lang.Integer
normalized_position	All_Reads.normalized_coverage
0	0.117147
1	0.21483
2	0.346652
3	0.444605
4	0.501059
5	0.582321
6	0.638966
7	0.701339
8	0.752711
9	0.803777
10	0.842799
11	0.868566
12	0.894881
13	0.919018
14	0.944815
15	0.975437
16	0.995324
17	1.008034
18	1.023882
19	1.034893
20	1.045453
21	1.064497
22	1.080511
23	1.096301
24	1.109421
25	1.115625
26	1.118111
27	1.133093
28	1.14018
29	1.152626
30	1.153971
31	1.160599
32	1.169804
33	1.18239
34	1.196198
35	1.198166
36	1.207943
37	1.223027
38	1.232202
39	1.234714
40	1.229419
41	1.220999
42	1.218905
43	1.21598
44	1.211772
45	1.210358
46	1.218624
47	1.213153
48	1.209351
49	1.205109
50	1.197034
51	1.178187
52	1.174345
53	1.187926
54	1.199546
55	1.190423
56	1.183468
57	1.18057
58	1.188497
59	1.185676
60	1.183272
61	1.182778
62	1.190315
63	1.192088
64	1.185591
65	1.166379
66	1.156899
67	1.151219
68	1.138722
69	1.122153
70	1.120918
71	1.126434
72	1.131063
73	1.128779
74	1.116156
75	1.109075
76	1.100121
77	1.084763
78	1.092559
79	1.086134
80	1.061458
81	1.040833
82	1.029897
83	1.009728
84	0.994126
85	0.976943
86	0.96399
87	0.93568
88	0.908629
89	0.873293
90	0.840317
91	0.801849
92	0.762338
93	0.717015
94	0.719687
95	0.617677
96	0.506734
97	0.425406
98	0.315744
99	0.177877
100	0.067099