Left reads: Input : 5574416 Mapped : 5200084 (93.3% of input) of these: 492513 ( 9.5%) have multiple alignments (9860 have >20) Right reads: Input : 5574416 Mapped : 4950995 (88.8% of input) of these: 437053 ( 8.8%) have multiple alignments (9769 have >20) 91.1% overall read mapping rate. Aligned pairs: 4782207 of these: 419715 ( 8.8%) have multiple alignments 74903 ( 1.6%) are discordant alignments 84.4% concordant pair alignment rate.