## htsjdk.samtools.metrics.StringHeader
# picard.analysis.CollectRnaSeqMetrics REF_FLAT=genes_refFlat RIBOSOMAL_INTERVALS=rRNA_intervalList_sorted STRAND_SPECIFICITY=FIRST_READ_TRANSCRIPTION_STRAND INPUT=WT8_primary_unique.bam OUTPUT=CollectRnaSeqMetrics/WT8_metrics    MINIMUM_LENGTH=500 RRNA_FRAGMENT_PERCENTAGE=0.8 METRIC_ACCUMULATION_LEVEL=[ALL_READS] ASSUME_SORTED=true STOP_AFTER=0 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Tue Apr 30 04:26:32 EDT 2019

## METRICS CLASS	picard.analysis.RnaSeqMetrics
PF_BASES	PF_ALIGNED_BASES	RIBOSOMAL_BASES	CODING_BASES	UTR_BASES	INTRONIC_BASES	INTERGENIC_BASES	IGNORED_READS	CORRECT_STRAND_READS	INCORRECT_STRAND_READS	PCT_RIBOSOMAL_BASES	PCT_CODING_BASES	PCT_UTR_BASES	PCT_INTRONIC_BASES	PCT_INTERGENIC_BASES	PCT_MRNA_BASES	PCT_USABLE_BASES	PCT_CORRECT_STRAND_READS	MEDIAN_CV_COVERAGE	MEDIAN_5PRIME_BIAS	MEDIAN_3PRIME_BIAS	MEDIAN_5PRIME_TO_3PRIME_BIAS	SAMPLE	LIBRARY	READ_GROUP
392300719	392271835	21980597	223596408	94730334	18984317	32991718	0	116610	7169178	0.056034	0.570004	0.241492	0.048396	0.084104	0.811495	0.811436	0.016005	0.4505	0.378023	0.428329	0.943293			

## HISTOGRAM	java.lang.Integer
normalized_position	All_Reads.normalized_coverage
0	0.117386
1	0.21223
2	0.339579
3	0.430495
4	0.482925
5	0.566092
6	0.624722
7	0.678366
8	0.731089
9	0.780525
10	0.814168
11	0.840751
12	0.864448
13	0.888432
14	0.914327
15	0.937191
16	0.946887
17	0.956589
18	0.982017
19	1.003207
20	1.012943
21	1.036147
22	1.050213
23	1.063195
24	1.076636
25	1.087611
26	1.089591
27	1.093912
28	1.109957
29	1.125002
30	1.131024
31	1.150987
32	1.159054
33	1.166917
34	1.182096
35	1.184002
36	1.190615
37	1.205554
38	1.207559
39	1.212445
40	1.211034
41	1.205755
42	1.207203
43	1.211827
44	1.216881
45	1.220073
46	1.218743
47	1.199588
48	1.199169
49	1.199673
50	1.187207
51	1.178087
52	1.175671
53	1.185066
54	1.194165
55	1.185699
56	1.180162
57	1.180077
58	1.191449
59	1.19279
60	1.201156
61	1.203887
62	1.199754
63	1.207232
64	1.200993
65	1.186219
66	1.172709
67	1.166198
68	1.148752
69	1.138925
70	1.142988
71	1.160457
72	1.163333
73	1.148698
74	1.150403
75	1.135824
76	1.108571
77	1.098516
78	1.101828
79	1.104669
80	1.082068
81	1.059011
82	1.058945
83	1.05348
84	1.035463
85	1.02538
86	1.013834
87	0.98177
88	0.956184
89	0.91534
90	0.873939
91	0.831878
92	0.794806
93	0.755203
94	0.761227
95	0.651036
96	0.534277
97	0.451502
98	0.337653
99	0.187808
100	0.072162