Left reads: Input : 5579030 Mapped : 5194867 (93.1% of input) of these: 492507 ( 9.5%) have multiple alignments (9655 have >20) Right reads: Input : 5579030 Mapped : 4994057 (89.5% of input) of these: 440654 ( 8.8%) have multiple alignments (9580 have >20) 91.3% overall read mapping rate. Aligned pairs: 4816759 of these: 422253 ( 8.8%) have multiple alignments 73488 ( 1.5%) are discordant alignments 85.0% concordant pair alignment rate.