## htsjdk.samtools.metrics.StringHeader
# picard.analysis.CollectRnaSeqMetrics REF_FLAT=genes_refFlat RIBOSOMAL_INTERVALS=rRNA_intervalList_sorted STRAND_SPECIFICITY=FIRST_READ_TRANSCRIPTION_STRAND INPUT=WT7_primary_unique.bam OUTPUT=CollectRnaSeqMetrics/WT7_metrics    MINIMUM_LENGTH=500 RRNA_FRAGMENT_PERCENTAGE=0.8 METRIC_ACCUMULATION_LEVEL=[ALL_READS] ASSUME_SORTED=true STOP_AFTER=0 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Tue Apr 30 04:23:59 EDT 2019

## METRICS CLASS	picard.analysis.RnaSeqMetrics
PF_BASES	PF_ALIGNED_BASES	RIBOSOMAL_BASES	CODING_BASES	UTR_BASES	INTRONIC_BASES	INTERGENIC_BASES	IGNORED_READS	CORRECT_STRAND_READS	INCORRECT_STRAND_READS	PCT_RIBOSOMAL_BASES	PCT_CODING_BASES	PCT_UTR_BASES	PCT_INTRONIC_BASES	PCT_INTERGENIC_BASES	PCT_MRNA_BASES	PCT_USABLE_BASES	PCT_CORRECT_STRAND_READS	MEDIAN_CV_COVERAGE	MEDIAN_5PRIME_BIAS	MEDIAN_3PRIME_BIAS	MEDIAN_5PRIME_TO_3PRIME_BIAS	SAMPLE	LIBRARY	READ_GROUP
393765372	393736207	22152445	224094765	95023946	19084125	33392761	0	116077	7185046	0.056262	0.569149	0.241339	0.048469	0.08481	0.810489	0.810429	0.015899	0.448187	0.39094	0.418966	0.969469			

## HISTOGRAM	java.lang.Integer
normalized_position	All_Reads.normalized_coverage
0	0.118683
1	0.211608
2	0.33673
3	0.433912
4	0.487715
5	0.564343
6	0.62512
7	0.689598
8	0.743419
9	0.789274
10	0.820327
11	0.842451
12	0.867847
13	0.894759
14	0.915504
15	0.933716
16	0.948144
17	0.963304
18	0.992275
19	1.004401
20	1.00998
21	1.026378
22	1.041328
23	1.059427
24	1.071844
25	1.083633
26	1.082635
27	1.09717
28	1.108284
29	1.123153
30	1.125233
31	1.146108
32	1.158407
33	1.169496
34	1.172833
35	1.173873
36	1.188984
37	1.214514
38	1.214286
39	1.215402
40	1.215263
41	1.214932
42	1.208118
43	1.204255
44	1.201032
45	1.202261
46	1.204837
47	1.205101
48	1.204348
49	1.189837
50	1.178428
51	1.175666
52	1.170701
53	1.174328
54	1.185246
55	1.190185
56	1.186977
57	1.176777
58	1.183589
59	1.190317
60	1.201614
61	1.198535
62	1.190714
63	1.194056
64	1.203451
65	1.189051
66	1.182266
67	1.173531
68	1.165037
69	1.154284
70	1.15481
71	1.159554
72	1.160065
73	1.15328
74	1.154603
75	1.141785
76	1.121824
77	1.109207
78	1.108
79	1.106359
80	1.090161
81	1.068285
82	1.061602
83	1.049154
84	1.037197
85	1.024671
86	1.000803
87	0.970727
88	0.954942
89	0.919557
90	0.878779
91	0.843302
92	0.804324
93	0.757343
94	0.75429
95	0.642931
96	0.5279
97	0.445371
98	0.328072
99	0.184648
100	0.069371