## htsjdk.samtools.metrics.StringHeader
# picard.analysis.CollectRnaSeqMetrics REF_FLAT=genes_refFlat RIBOSOMAL_INTERVALS=rRNA_intervalList_sorted STRAND_SPECIFICITY=FIRST_READ_TRANSCRIPTION_STRAND INPUT=WT6_primary_unique.bam OUTPUT=CollectRnaSeqMetrics/WT6_metrics    MINIMUM_LENGTH=500 RRNA_FRAGMENT_PERCENTAGE=0.8 METRIC_ACCUMULATION_LEVEL=[ALL_READS] ASSUME_SORTED=true STOP_AFTER=0 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Tue Apr 30 04:21:20 EDT 2019

## METRICS CLASS	picard.analysis.RnaSeqMetrics
PF_BASES	PF_ALIGNED_BASES	RIBOSOMAL_BASES	CODING_BASES	UTR_BASES	INTRONIC_BASES	INTERGENIC_BASES	IGNORED_READS	CORRECT_STRAND_READS	INCORRECT_STRAND_READS	PCT_RIBOSOMAL_BASES	PCT_CODING_BASES	PCT_UTR_BASES	PCT_INTRONIC_BASES	PCT_INTERGENIC_BASES	PCT_MRNA_BASES	PCT_USABLE_BASES	PCT_CORRECT_STRAND_READS	MEDIAN_CV_COVERAGE	MEDIAN_5PRIME_BIAS	MEDIAN_3PRIME_BIAS	MEDIAN_5PRIME_TO_3PRIME_BIAS	SAMPLE	LIBRARY	READ_GROUP
390824823	390796215	21932817	222728793	94262931	18938064	32945092	0	115934	7137495	0.056123	0.569936	0.241207	0.04846	0.084302	0.811143	0.811084	0.015983	0.447097	0.390887	0.434031	0.947791			

## HISTOGRAM	java.lang.Integer
normalized_position	All_Reads.normalized_coverage
0	0.1161
1	0.209341
2	0.33371
3	0.424987
4	0.474877
5	0.557443
6	0.61887
7	0.678762
8	0.730746
9	0.779258
10	0.817977
11	0.847916
12	0.876302
13	0.903249
14	0.916262
15	0.941006
16	0.954707
17	0.961558
18	0.990241
19	1.00979
20	1.014435
21	1.028384
22	1.048907
23	1.06628
24	1.076357
25	1.082351
26	1.087694
27	1.101728
28	1.120655
29	1.13203
30	1.135929
31	1.152398
32	1.156723
33	1.161222
34	1.178685
35	1.184163
36	1.188669
37	1.216647
38	1.225064
39	1.228247
40	1.220349
41	1.213712
42	1.209574
43	1.204212
44	1.208049
45	1.213903
46	1.223958
47	1.217656
48	1.211807
49	1.201858
50	1.186172
51	1.176169
52	1.173355
53	1.183532
54	1.197469
55	1.199227
56	1.198003
57	1.196664
58	1.201297
59	1.197603
60	1.204397
61	1.204633
62	1.193861
63	1.201644
64	1.200916
65	1.186256
66	1.175529
67	1.161725
68	1.153605
69	1.142958
70	1.138467
71	1.149571
72	1.147095
73	1.14155
74	1.145001
75	1.13376
76	1.113949
77	1.103417
78	1.10528
79	1.09962
80	1.080314
81	1.06388
82	1.058783
83	1.044478
84	1.031935
85	1.017894
86	0.993694
87	0.965289
88	0.942753
89	0.903748
90	0.865442
91	0.826007
92	0.791133
93	0.745195
94	0.748067
95	0.635485
96	0.528811
97	0.450412
98	0.339564
99	0.187463
100	0.071363