## htsjdk.samtools.metrics.StringHeader
# picard.analysis.CollectRnaSeqMetrics REF_FLAT=genes_refFlat RIBOSOMAL_INTERVALS=rRNA_intervalList_sorted STRAND_SPECIFICITY=FIRST_READ_TRANSCRIPTION_STRAND INPUT=WT5_primary_unique.bam OUTPUT=CollectRnaSeqMetrics/WT5_metrics    MINIMUM_LENGTH=500 RRNA_FRAGMENT_PERCENTAGE=0.8 METRIC_ACCUMULATION_LEVEL=[ALL_READS] ASSUME_SORTED=true STOP_AFTER=0 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Tue Apr 30 04:21:09 EDT 2019

## METRICS CLASS	picard.analysis.RnaSeqMetrics
PF_BASES	PF_ALIGNED_BASES	RIBOSOMAL_BASES	CODING_BASES	UTR_BASES	INTRONIC_BASES	INTERGENIC_BASES	IGNORED_READS	CORRECT_STRAND_READS	INCORRECT_STRAND_READS	PCT_RIBOSOMAL_BASES	PCT_CODING_BASES	PCT_UTR_BASES	PCT_INTRONIC_BASES	PCT_INTERGENIC_BASES	PCT_MRNA_BASES	PCT_USABLE_BASES	PCT_CORRECT_STRAND_READS	MEDIAN_CV_COVERAGE	MEDIAN_5PRIME_BIAS	MEDIAN_3PRIME_BIAS	MEDIAN_5PRIME_TO_3PRIME_BIAS	SAMPLE	LIBRARY	READ_GROUP
386578898	386550326	21716081	219832486	93354298	18806092	32852900	0	114975	7051732	0.056179	0.568703	0.241506	0.048651	0.08499	0.81021	0.81015	0.016043	0.448195	0.389842	0.422725	0.98524			

## HISTOGRAM	java.lang.Integer
normalized_position	All_Reads.normalized_coverage
0	0.117351
1	0.20992
2	0.33911
3	0.43582
4	0.485143
5	0.564953
6	0.626147
7	0.680101
8	0.729575
9	0.781369
10	0.818571
11	0.841479
12	0.862535
13	0.89484
14	0.926094
15	0.951748
16	0.966607
17	0.981445
18	0.998133
19	1.008734
20	1.023781
21	1.043139
22	1.060189
23	1.071097
24	1.074418
25	1.07909
26	1.08446
27	1.093762
28	1.10884
29	1.131355
30	1.135516
31	1.156938
32	1.167078
33	1.16907
34	1.180552
35	1.183579
36	1.188799
37	1.206226
38	1.215144
39	1.218355
40	1.214573
41	1.20721
42	1.205946
43	1.209993
44	1.212389
45	1.211572
46	1.214432
47	1.209032
48	1.197509
49	1.188478
50	1.17407
51	1.164021
52	1.168771
53	1.17674
54	1.183776
55	1.182887
56	1.183666
57	1.178987
58	1.187501
59	1.185087
60	1.190329
61	1.187732
62	1.187828
63	1.195083
64	1.200944
65	1.191674
66	1.181808
67	1.171323
68	1.157793
69	1.142772
70	1.142939
71	1.163533
72	1.169001
73	1.165056
74	1.160038
75	1.147186
76	1.123589
77	1.116912
78	1.114367
79	1.111677
80	1.086502
81	1.057995
82	1.046882
83	1.040583
84	1.028951
85	1.021126
86	0.998084
87	0.967054
88	0.945534
89	0.898245
90	0.858185
91	0.827719
92	0.787347
93	0.748575
94	0.752712
95	0.638633
96	0.528742
97	0.446444
98	0.334582
99	0.185577
100	0.071818