Left reads: Input : 5177257 Mapped : 4801458 (92.7% of input) of these: 428028 ( 8.9%) have multiple alignments (8975 have >20) Right reads: Input : 5177257 Mapped : 4594422 (88.7% of input) of these: 382802 ( 8.3%) have multiple alignments (8923 have >20) 90.7% overall read mapping rate. Aligned pairs: 4425842 of these: 366278 ( 8.3%) have multiple alignments 85533 ( 1.9%) are discordant alignments 83.8% concordant pair alignment rate.