## htsjdk.samtools.metrics.StringHeader
# picard.analysis.CollectRnaSeqMetrics REF_FLAT=genes_refFlat RIBOSOMAL_INTERVALS=rRNA_intervalList_sorted STRAND_SPECIFICITY=FIRST_READ_TRANSCRIPTION_STRAND INPUT=WT4_primary_unique.bam OUTPUT=CollectRnaSeqMetrics/WT4_metrics    MINIMUM_LENGTH=500 RRNA_FRAGMENT_PERCENTAGE=0.8 METRIC_ACCUMULATION_LEVEL=[ALL_READS] ASSUME_SORTED=true STOP_AFTER=0 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Tue Apr 30 04:24:38 EDT 2019

## METRICS CLASS	picard.analysis.RnaSeqMetrics
PF_BASES	PF_ALIGNED_BASES	RIBOSOMAL_BASES	CODING_BASES	UTR_BASES	INTRONIC_BASES	INTERGENIC_BASES	IGNORED_READS	CORRECT_STRAND_READS	INCORRECT_STRAND_READS	PCT_RIBOSOMAL_BASES	PCT_CODING_BASES	PCT_UTR_BASES	PCT_INTRONIC_BASES	PCT_INTERGENIC_BASES	PCT_MRNA_BASES	PCT_USABLE_BASES	PCT_CORRECT_STRAND_READS	MEDIAN_CV_COVERAGE	MEDIAN_5PRIME_BIAS	MEDIAN_3PRIME_BIAS	MEDIAN_5PRIME_TO_3PRIME_BIAS	SAMPLE	LIBRARY	READ_GROUP
365267199	365232529	31726576	201186705	85376998	17852180	29107445	0	113101	6444900	0.086867	0.550846	0.233761	0.048879	0.079696	0.784606	0.784532	0.017246	0.458849	0.363022	0.452956	0.908008			

## HISTOGRAM	java.lang.Integer
normalized_position	All_Reads.normalized_coverage
0	0.111836
1	0.198782
2	0.320533
3	0.407194
4	0.45859
5	0.536232
6	0.602449
7	0.658138
8	0.707941
9	0.754008
10	0.792808
11	0.820361
12	0.837882
13	0.8566
14	0.875351
15	0.90389
16	0.918098
17	0.92655
18	0.950558
19	0.968776
20	0.985857
21	1.00103
22	1.02741
23	1.047522
24	1.054536
25	1.064522
26	1.078896
27	1.085685
28	1.100833
29	1.111321
30	1.110673
31	1.128047
32	1.149595
33	1.149108
34	1.16232
35	1.171813
36	1.179272
37	1.19366
38	1.199829
39	1.207967
40	1.208285
41	1.203126
42	1.200105
43	1.200191
44	1.205977
45	1.206798
46	1.212804
47	1.207187
48	1.199232
49	1.202275
50	1.195358
51	1.181243
52	1.183747
53	1.19328
54	1.206567
55	1.197946
56	1.195702
57	1.203267
58	1.21456
59	1.208284
60	1.219754
61	1.216188
62	1.203871
63	1.205412
64	1.214146
65	1.204459
66	1.200256
67	1.194068
68	1.188354
69	1.182338
70	1.174268
71	1.170706
72	1.167353
73	1.160218
74	1.164952
75	1.154488
76	1.141042
77	1.127608
78	1.139445
79	1.139243
80	1.116215
81	1.093541
82	1.082175
83	1.065866
84	1.047042
85	1.029485
86	1.010012
87	0.98442
88	0.970751
89	0.941051
90	0.900713
91	0.858023
92	0.816171
93	0.771184
94	0.772132
95	0.664723
96	0.554216
97	0.463758
98	0.342131
99	0.191564
100	0.072535