Left reads: Input : 5155186 Mapped : 4771247 (92.6% of input) of these: 426934 ( 8.9%) have multiple alignments (9013 have >20) Right reads: Input : 5155186 Mapped : 4608537 (89.4% of input) of these: 384601 ( 8.3%) have multiple alignments (8983 have >20) 91.0% overall read mapping rate. Aligned pairs: 4430559 of these: 367080 ( 8.3%) have multiple alignments 85063 ( 1.9%) are discordant alignments 84.3% concordant pair alignment rate.