## htsjdk.samtools.metrics.StringHeader
# picard.analysis.CollectRnaSeqMetrics REF_FLAT=genes_refFlat RIBOSOMAL_INTERVALS=rRNA_intervalList_sorted STRAND_SPECIFICITY=FIRST_READ_TRANSCRIPTION_STRAND INPUT=WT3_primary_unique.bam OUTPUT=CollectRnaSeqMetrics/WT3_metrics    MINIMUM_LENGTH=500 RRNA_FRAGMENT_PERCENTAGE=0.8 METRIC_ACCUMULATION_LEVEL=[ALL_READS] ASSUME_SORTED=true STOP_AFTER=0 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Tue Apr 30 04:19:40 EDT 2019

## METRICS CLASS	picard.analysis.RnaSeqMetrics
PF_BASES	PF_ALIGNED_BASES	RIBOSOMAL_BASES	CODING_BASES	UTR_BASES	INTRONIC_BASES	INTERGENIC_BASES	IGNORED_READS	CORRECT_STRAND_READS	INCORRECT_STRAND_READS	PCT_RIBOSOMAL_BASES	PCT_CODING_BASES	PCT_UTR_BASES	PCT_INTRONIC_BASES	PCT_INTERGENIC_BASES	PCT_MRNA_BASES	PCT_USABLE_BASES	PCT_CORRECT_STRAND_READS	MEDIAN_CV_COVERAGE	MEDIAN_5PRIME_BIAS	MEDIAN_3PRIME_BIAS	MEDIAN_5PRIME_TO_3PRIME_BIAS	SAMPLE	LIBRARY	READ_GROUP
364555055	364520801	31873487	200629701	84950435	17898120	29186196	0	113576	6420628	0.087439	0.550393	0.233047	0.0491	0.080067	0.78344	0.783366	0.017382	0.459285	0.379099	0.430123	0.921965			

## HISTOGRAM	java.lang.Integer
normalized_position	All_Reads.normalized_coverage
0	0.1123
1	0.195566
2	0.31679
3	0.415166
4	0.462881
5	0.540104
6	0.602802
7	0.656993
8	0.702809
9	0.752861
10	0.795314
11	0.820713
12	0.840597
13	0.859276
14	0.883527
15	0.913031
16	0.933632
17	0.947073
18	0.968244
19	0.985206
20	0.999032
21	1.013236
22	1.028769
23	1.05035
24	1.062466
25	1.078703
26	1.081563
27	1.087008
28	1.103558
29	1.115471
30	1.121507
31	1.136787
32	1.14187
33	1.145647
34	1.166703
35	1.172629
36	1.17698
37	1.191304
38	1.193656
39	1.211114
40	1.215583
41	1.213815
42	1.21424
43	1.211133
44	1.209411
45	1.211763
46	1.211671
47	1.211465
48	1.201907
49	1.190173
50	1.18124
51	1.176688
52	1.180317
53	1.19048
54	1.20183
55	1.203886
56	1.202813
57	1.197207
58	1.207079
59	1.21022
60	1.22133
61	1.211165
62	1.205482
63	1.206689
64	1.209329
65	1.197011
66	1.190633
67	1.184753
68	1.173414
69	1.158923
70	1.154686
71	1.158928
72	1.168915
73	1.170588
74	1.169276
75	1.16338
76	1.144699
77	1.130091
78	1.134777
79	1.127841
80	1.109498
81	1.088971
82	1.078109
83	1.058917
84	1.035743
85	1.02683
86	1.01538
87	0.986989
88	0.971084
89	0.93302
90	0.895606
91	0.851271
92	0.808914
93	0.769488
94	0.766169
95	0.651945
96	0.539787
97	0.454655
98	0.342055
99	0.193958
100	0.071546