Left reads: Input : 5137613 Mapped : 4776775 (93.0% of input) of these: 426102 ( 8.9%) have multiple alignments (9019 have >20) Right reads: Input : 5137613 Mapped : 4566347 (88.9% of input) of these: 379615 ( 8.3%) have multiple alignments (8973 have >20) 90.9% overall read mapping rate. Aligned pairs: 4413664 of these: 364306 ( 8.3%) have multiple alignments 85599 ( 1.9%) are discordant alignments 84.2% concordant pair alignment rate.