## htsjdk.samtools.metrics.StringHeader
# picard.analysis.CollectRnaSeqMetrics REF_FLAT=genes_refFlat RIBOSOMAL_INTERVALS=rRNA_intervalList_sorted STRAND_SPECIFICITY=FIRST_READ_TRANSCRIPTION_STRAND INPUT=WT2_primary_unique.bam OUTPUT=CollectRnaSeqMetrics/WT2_metrics    MINIMUM_LENGTH=500 RRNA_FRAGMENT_PERCENTAGE=0.8 METRIC_ACCUMULATION_LEVEL=[ALL_READS] ASSUME_SORTED=true STOP_AFTER=0 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Tue Apr 30 04:20:00 EDT 2019

## METRICS CLASS	picard.analysis.RnaSeqMetrics
PF_BASES	PF_ALIGNED_BASES	RIBOSOMAL_BASES	CODING_BASES	UTR_BASES	INTRONIC_BASES	INTERGENIC_BASES	IGNORED_READS	CORRECT_STRAND_READS	INCORRECT_STRAND_READS	PCT_RIBOSOMAL_BASES	PCT_CODING_BASES	PCT_UTR_BASES	PCT_INTRONIC_BASES	PCT_INTERGENIC_BASES	PCT_MRNA_BASES	PCT_USABLE_BASES	PCT_CORRECT_STRAND_READS	MEDIAN_CV_COVERAGE	MEDIAN_5PRIME_BIAS	MEDIAN_3PRIME_BIAS	MEDIAN_5PRIME_TO_3PRIME_BIAS	SAMPLE	LIBRARY	READ_GROUP
363236535	363202383	31669266	200002489	84889100	17778899	28879859	0	111805	6406384	0.087195	0.550664	0.233724	0.04895	0.079515	0.784388	0.784314	0.017153	0.459767	0.372525	0.445066	0.89051			

## HISTOGRAM	java.lang.Integer
normalized_position	All_Reads.normalized_coverage
0	0.116948
1	0.202208
2	0.319691
3	0.412762
4	0.463206
5	0.535434
6	0.597644
7	0.658054
8	0.704811
9	0.746658
10	0.78368
11	0.803259
12	0.834989
13	0.858998
14	0.883809
15	0.912331
16	0.927938
17	0.938789
18	0.960181
19	0.975979
20	0.991129
21	1.012658
22	1.032415
23	1.042979
24	1.055327
25	1.068831
26	1.079351
27	1.085212
28	1.096268
29	1.110467
30	1.117517
31	1.128249
32	1.138196
33	1.149529
34	1.165055
35	1.16829
36	1.171219
37	1.191783
38	1.198989
39	1.209963
40	1.21231
41	1.211234
42	1.205142
43	1.199549
44	1.195565
45	1.207683
46	1.211629
47	1.212305
48	1.21698
49	1.210482
50	1.189625
51	1.183472
52	1.182255
53	1.194158
54	1.207238
55	1.206825
56	1.200548
57	1.197972
58	1.204858
59	1.198358
60	1.204868
61	1.208496
62	1.20781
63	1.212383
64	1.208663
65	1.195453
66	1.191491
67	1.186186
68	1.180072
69	1.17314
70	1.172405
71	1.181658
72	1.182145
73	1.17229
74	1.165909
75	1.160943
76	1.146615
77	1.12898
78	1.136407
79	1.139278
80	1.112658
81	1.085329
82	1.08053
83	1.063599
84	1.045472
85	1.030497
86	1.020784
87	0.990626
88	0.965462
89	0.930101
90	0.894874
91	0.85763
92	0.820439
93	0.771719
94	0.771012
95	0.657448
96	0.544142
97	0.456838
98	0.34405
99	0.192384
100	0.071908