Left reads: Input : 5098929 Mapped : 4695317 (92.1% of input) of these: 406221 ( 8.7%) have multiple alignments (8277 have >20) Right reads: Input : 5098929 Mapped : 4435284 (87.0% of input) of these: 358550 ( 8.1%) have multiple alignments (8212 have >20) 89.5% overall read mapping rate. Aligned pairs: 4259773 of these: 341578 ( 8.0%) have multiple alignments 83598 ( 2.0%) are discordant alignments 81.9% concordant pair alignment rate.