Left reads: Input : 5140377 Mapped : 4724386 (91.9% of input) of these: 410857 ( 8.7%) have multiple alignments (8604 have >20) Right reads: Input : 5140377 Mapped : 4510467 (87.7% of input) of these: 366337 ( 8.1%) have multiple alignments (8554 have >20) 89.8% overall read mapping rate. Aligned pairs: 4323567 of these: 347869 ( 8.0%) have multiple alignments 84597 ( 2.0%) are discordant alignments 82.5% concordant pair alignment rate.