## htsjdk.samtools.metrics.StringHeader
# picard.analysis.CollectRnaSeqMetrics REF_FLAT=genes_refFlat RIBOSOMAL_INTERVALS=rRNA_intervalList_sorted STRAND_SPECIFICITY=FIRST_READ_TRANSCRIPTION_STRAND INPUT=WT11_primary_unique.bam OUTPUT=CollectRnaSeqMetrics/WT11_metrics    MINIMUM_LENGTH=500 RRNA_FRAGMENT_PERCENTAGE=0.8 METRIC_ACCUMULATION_LEVEL=[ALL_READS] ASSUME_SORTED=true STOP_AFTER=0 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Tue Apr 30 04:22:38 EDT 2019

## METRICS CLASS	picard.analysis.RnaSeqMetrics
PF_BASES	PF_ALIGNED_BASES	RIBOSOMAL_BASES	CODING_BASES	UTR_BASES	INTRONIC_BASES	INTERGENIC_BASES	IGNORED_READS	CORRECT_STRAND_READS	INCORRECT_STRAND_READS	PCT_RIBOSOMAL_BASES	PCT_CODING_BASES	PCT_UTR_BASES	PCT_INTRONIC_BASES	PCT_INTERGENIC_BASES	PCT_MRNA_BASES	PCT_USABLE_BASES	PCT_CORRECT_STRAND_READS	MEDIAN_CV_COVERAGE	MEDIAN_5PRIME_BIAS	MEDIAN_3PRIME_BIAS	MEDIAN_5PRIME_TO_3PRIME_BIAS	SAMPLE	LIBRARY	READ_GROUP
359853902	359821301	29076499	200699243	82590736	18282056	29188648	0	96610	6387857	0.080808	0.557775	0.229533	0.050809	0.08112	0.787307	0.787236	0.014899	0.447581	0.394606	0.399296	1.059182			

## HISTOGRAM	java.lang.Integer
normalized_position	All_Reads.normalized_coverage
0	0.121073
1	0.218088
2	0.351632
3	0.452205
4	0.506291
5	0.591506
6	0.655464
7	0.710873
8	0.76124
9	0.810159
10	0.849146
11	0.87205
12	0.897459
13	0.919538
14	0.937449
15	0.963691
16	0.980063
17	0.998614
18	1.015885
19	1.029241
20	1.037582
21	1.051761
22	1.068917
23	1.080826
24	1.09017
25	1.100087
26	1.110421
27	1.121969
28	1.132128
29	1.145295
30	1.146572
31	1.168335
32	1.179354
33	1.173986
34	1.184015
35	1.191917
36	1.20113
37	1.21597
38	1.218709
39	1.230949
40	1.23156
41	1.216536
42	1.208712
43	1.198788
44	1.206226
45	1.215163
46	1.213114
47	1.203191
48	1.204857
49	1.203188
50	1.192165
51	1.176156
52	1.16985
53	1.177239
54	1.190795
55	1.187507
56	1.178727
57	1.181401
58	1.190001
59	1.192968
60	1.203803
61	1.197299
62	1.187124
63	1.188117
64	1.1955
65	1.181908
66	1.170649
67	1.168528
68	1.152442
69	1.137999
70	1.131959
71	1.131845
72	1.132862
73	1.129063
74	1.122397
75	1.113475
76	1.103987
77	1.087216
78	1.099151
79	1.095782
80	1.072301
81	1.051184
82	1.046504
83	1.017449
84	0.995394
85	0.983712
86	0.970823
87	0.941371
88	0.912874
89	0.874021
90	0.844266
91	0.803006
92	0.763634
93	0.718493
94	0.717849
95	0.609115
96	0.501096
97	0.420955
98	0.311985
99	0.174707
100	0.065929