Left reads: Input : 5147929 Mapped : 4761852 (92.5% of input) of these: 411855 ( 8.6%) have multiple alignments (8766 have >20) Right reads: Input : 5147929 Mapped : 4494956 (87.3% of input) of these: 362402 ( 8.1%) have multiple alignments (8661 have >20) 89.9% overall read mapping rate. Aligned pairs: 4334438 of these: 346634 ( 8.0%) have multiple alignments 84537 ( 2.0%) are discordant alignments 82.6% concordant pair alignment rate.