## htsjdk.samtools.metrics.StringHeader
# picard.analysis.CollectRnaSeqMetrics REF_FLAT=genes_refFlat RIBOSOMAL_INTERVALS=rRNA_intervalList_sorted STRAND_SPECIFICITY=FIRST_READ_TRANSCRIPTION_STRAND INPUT=WT10_primary_unique.bam OUTPUT=CollectRnaSeqMetrics/WT10_metrics    MINIMUM_LENGTH=500 RRNA_FRAGMENT_PERCENTAGE=0.8 METRIC_ACCUMULATION_LEVEL=[ALL_READS] ASSUME_SORTED=true STOP_AFTER=0 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Tue Apr 30 04:25:19 EDT 2019

## METRICS CLASS	picard.analysis.RnaSeqMetrics
PF_BASES	PF_ALIGNED_BASES	RIBOSOMAL_BASES	CODING_BASES	UTR_BASES	INTRONIC_BASES	INTERGENIC_BASES	IGNORED_READS	CORRECT_STRAND_READS	INCORRECT_STRAND_READS	PCT_RIBOSOMAL_BASES	PCT_CODING_BASES	PCT_UTR_BASES	PCT_INTRONIC_BASES	PCT_INTERGENIC_BASES	PCT_MRNA_BASES	PCT_USABLE_BASES	PCT_CORRECT_STRAND_READS	MEDIAN_CV_COVERAGE	MEDIAN_5PRIME_BIAS	MEDIAN_3PRIME_BIAS	MEDIAN_5PRIME_TO_3PRIME_BIAS	SAMPLE	LIBRARY	READ_GROUP
360901910	360869474	28896788	201624477	82958604	18395432	29009822	0	95543	6418217	0.080075	0.558719	0.229885	0.050975	0.080389	0.788604	0.788533	0.014668	0.445859	0.396751	0.411804	1.035188			

## HISTOGRAM	java.lang.Integer
normalized_position	All_Reads.normalized_coverage
0	0.120642
1	0.217671
2	0.353727
3	0.454483
4	0.509114
5	0.590848
6	0.651101
7	0.707226
8	0.760032
9	0.812268
10	0.848266
11	0.87319
12	0.893827
13	0.918844
14	0.943084
15	0.969342
16	0.980881
17	0.99153
18	1.017736
19	1.036878
20	1.044858
21	1.060044
22	1.077742
23	1.091541
24	1.096064
25	1.108611
26	1.114804
27	1.121898
28	1.141317
29	1.154457
30	1.153972
31	1.164122
32	1.172034
33	1.182638
34	1.1909
35	1.195005
36	1.192658
37	1.20826
38	1.226177
39	1.226278
40	1.226068
41	1.223978
42	1.213623
43	1.210659
44	1.21803
45	1.219054
46	1.218423
47	1.215894
48	1.21438
49	1.208498
50	1.197863
51	1.181063
52	1.181447
53	1.185077
54	1.199655
55	1.188407
56	1.183002
57	1.187552
58	1.193189
59	1.18863
60	1.188421
61	1.187994
62	1.182697
63	1.185703
64	1.181899
65	1.168884
66	1.162975
67	1.153424
68	1.142147
69	1.131874
70	1.128191
71	1.130381
72	1.138219
73	1.130488
74	1.12107
75	1.113258
76	1.0998
77	1.088334
78	1.09199
79	1.086617
80	1.060399
81	1.043692
82	1.036449
83	1.015215
84	0.994531
85	0.984225
86	0.962171
87	0.933283
88	0.907688
89	0.870095
90	0.832253
91	0.794014
92	0.756494
93	0.712652
94	0.714794
95	0.606235
96	0.504351
97	0.425081
98	0.316481
99	0.177224
100	0.068542