Left reads: Input : 5063669 Mapped : 4706099 (92.9% of input) of these: 422077 ( 9.0%) have multiple alignments (8811 have >20) Right reads: Input : 5063669 Mapped : 4508454 (89.0% of input) of these: 376352 ( 8.3%) have multiple alignments (8766 have >20) 91.0% overall read mapping rate. Aligned pairs: 4355774 of these: 360892 ( 8.3%) have multiple alignments 83808 ( 1.9%) are discordant alignments 84.4% concordant pair alignment rate.