## htsjdk.samtools.metrics.StringHeader
# picard.analysis.CollectRnaSeqMetrics REF_FLAT=genes_refFlat RIBOSOMAL_INTERVALS=rRNA_intervalList_sorted STRAND_SPECIFICITY=FIRST_READ_TRANSCRIPTION_STRAND INPUT=WT1_primary_unique.bam OUTPUT=CollectRnaSeqMetrics/WT1_metrics    MINIMUM_LENGTH=500 RRNA_FRAGMENT_PERCENTAGE=0.8 METRIC_ACCUMULATION_LEVEL=[ALL_READS] ASSUME_SORTED=true STOP_AFTER=0 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Tue Apr 30 04:27:12 EDT 2019

## METRICS CLASS	picard.analysis.RnaSeqMetrics
PF_BASES	PF_ALIGNED_BASES	RIBOSOMAL_BASES	CODING_BASES	UTR_BASES	INTRONIC_BASES	INTERGENIC_BASES	IGNORED_READS	CORRECT_STRAND_READS	INCORRECT_STRAND_READS	PCT_RIBOSOMAL_BASES	PCT_CODING_BASES	PCT_UTR_BASES	PCT_INTRONIC_BASES	PCT_INTERGENIC_BASES	PCT_MRNA_BASES	PCT_USABLE_BASES	PCT_CORRECT_STRAND_READS	MEDIAN_CV_COVERAGE	MEDIAN_5PRIME_BIAS	MEDIAN_3PRIME_BIAS	MEDIAN_5PRIME_TO_3PRIME_BIAS	SAMPLE	LIBRARY	READ_GROUP
358078508	358044516	31154125	196867683	83688727	17628583	28722438	0	111395	6307412	0.087012	0.549841	0.233738	0.049236	0.08022	0.78358	0.783505	0.017354	0.457105	0.369572	0.441174	0.903617			

## HISTOGRAM	java.lang.Integer
normalized_position	All_Reads.normalized_coverage
0	0.113112
1	0.196793
2	0.319655
3	0.41065
4	0.458214
5	0.538892
6	0.600246
7	0.65376
8	0.704882
9	0.759295
10	0.789668
11	0.812681
12	0.838249
13	0.857474
14	0.883186
15	0.913583
16	0.931262
17	0.941389
18	0.957814
19	0.972841
20	0.992231
21	1.015046
22	1.029888
23	1.043438
24	1.054946
25	1.065981
26	1.077417
27	1.081154
28	1.087571
29	1.099997
30	1.106177
31	1.119558
32	1.13801
33	1.149165
34	1.165734
35	1.166571
36	1.166492
37	1.184242
38	1.195937
39	1.203905
40	1.207123
41	1.207506
42	1.204976
43	1.203935
44	1.203495
45	1.205199
46	1.212499
47	1.206168
48	1.204708
49	1.200942
50	1.182184
51	1.168656
52	1.175425
53	1.185324
54	1.199508
55	1.203747
56	1.20452
57	1.206774
58	1.217944
59	1.215955
60	1.222681
61	1.218422
62	1.209574
63	1.207725
64	1.210598
65	1.199602
66	1.197208
67	1.191854
68	1.180494
69	1.170743
70	1.173002
71	1.184413
72	1.183817
73	1.1789
74	1.180652
75	1.161095
76	1.142184
77	1.137248
78	1.146223
79	1.136199
80	1.11245
81	1.096002
82	1.082965
83	1.062836
84	1.046099
85	1.036931
86	1.020629
87	0.991538
88	0.97226
89	0.935381
90	0.895956
91	0.851778
92	0.809496
93	0.766323
94	0.76865
95	0.658374
96	0.543805
97	0.455859
98	0.342441
99	0.192524
100	0.071317