-----------------------
Start of variable list:
-----------------------
Sample_ID:
WT2
Dataset_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/CAR_Project_Data/GSE96650_LxRKo
Sample_Labels_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/CAR_Project_Data/GSE96650_LxRKo/Scripts/00_Setup_Pipeline
-----------------------
End of variable list
-----------------------
==========================================================
Starting on : Mon Apr 29 14:50:58 EDT 2019
Running on node : scc-kb3
Current directory : /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/CAR_Project_Data/GSE96650_LxRKo/Scripts/03_Read_Length
Current job ID : 5762876
Current job name : Step_03_WT2
Task index number : undefined
Parameter for multiple cores : 1
==========================================================

Change dir to scratch directory


Print scratch directory location:

/scratch/5762876.1.linga

Loading required modules...


List files in scratch directory:

total 294M
drwx------   2 kkarri waxmanlab 4.0K Apr 29 14:52 .
drwxrwxrwt. 78 root   root      112K Apr 29 14:50 ..
-rw-r--r--   1 kkarri waxmanlab 145M Apr 29 14:51 SRR5345533_1.fastq.gz
-rw-r--r--   1 kkarri waxmanlab 150M Apr 29 14:52 SRR5345533_2.fastq.gz

Starting to run my commands


Unzip files:


Finished unzipping


Starting Read Length


Processing SRR5345533_1.fastq


Processing SRR5345533_2.fastq


Ending Read Length


List files in scratch

total 1.2G
drwx------   2 kkarri waxmanlab 4.0K Apr 29 14:53 .
drwxrwxrwt. 77 root   root      112K Apr 29 14:53 ..
-rw-r--r--   1 kkarri waxmanlab 582M Apr 29 14:51 SRR5345533_1.fastq
-rw-r--r--   1 kkarri waxmanlab 582M Apr 29 14:52 SRR5345533_2.fastq
==========================================================
Finished on : Mon Apr 29 14:54:00 EDT 2019
0 hours, 3 minutes and 2 seconds elapsed.
==========================================================