-----------------------
Start of variable list:
-----------------------
Sample_ID:
KI3
Dataset_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/CAR_Project_Data/GSE96650_LxRKo
Sample_Labels_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/CAR_Project_Data/GSE96650_LxRKo/Scripts/00_Setup_Pipeline
-----------------------
End of variable list
-----------------------
==========================================================
Starting on : Mon Apr 29 14:50:58 EDT 2019
Running on node : scc-kb3
Current directory : /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/CAR_Project_Data/GSE96650_LxRKo/Scripts/03_Read_Length
Current job ID : 5762918
Current job name : Step_03_KI3
Task index number : undefined
Parameter for multiple cores : 1
==========================================================

Change dir to scratch directory


Print scratch directory location:

/scratch/5762918.1.linga

Loading required modules...


List files in scratch directory:

total 327M
drwx------   2 kkarri waxmanlab 4.0K Apr 29 14:52 .
drwxrwxrwt. 78 root   root      112K Apr 29 14:50 ..
-rw-r--r--   1 kkarri waxmanlab 161M Apr 29 14:52 SRR5345546_1.fastq.gz
-rw-r--r--   1 kkarri waxmanlab 166M Apr 29 14:53 SRR5345546_2.fastq.gz

Starting to run my commands


Unzip files:


Finished unzipping


Starting Read Length


Processing SRR5345546_1.fastq


Processing SRR5345546_2.fastq


Ending Read Length


List files in scratch

total 1.3G
drwx------   2 kkarri waxmanlab 4.0K Apr 29 14:53 .
drwxrwxrwt. 76 root   root      112K Apr 29 14:54 ..
-rw-r--r--   1 kkarri waxmanlab 642M Apr 29 14:52 SRR5345546_1.fastq
-rw-r--r--   1 kkarri waxmanlab 641M Apr 29 14:53 SRR5345546_2.fastq
==========================================================
Finished on : Mon Apr 29 14:54:06 EDT 2019
0 hours, 3 minutes and 8 seconds elapsed.
==========================================================