Left reads: Input : 5148228 Mapped : 4822199 (93.7% of input) of these: 412026 ( 8.5%) have multiple alignments (11610 have >20) Right reads: Input : 5148228 Mapped : 4614711 (89.6% of input) of these: 369605 ( 8.0%) have multiple alignments (11489 have >20) 91.7% overall read mapping rate. Aligned pairs: 4478644 of these: 356000 ( 7.9%) have multiple alignments 44480 ( 1.0%) are discordant alignments 86.1% concordant pair alignment rate.